Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0197 ATGAGGTTGCTGCAGGTAATTCTTTGTCTTCTTGTTGTGGCTTTGAGGGTGTTTTTACTGCGCGGGGTGCAGTGCCAGCAACAAATGAGTAGTGACCTCGACAACCCTGCAGTTTTATCACTTGTTACTCAGCTCGTGTATACTCAAATCTCCAACTTGACATCTCTTCTCACTCAGGATATTAACGCCCGCTCCACTTTCTGCGTTAAAGATCCGGATGGCGATTGGGATAAAGCGTTTAATTTTTCATCCGATTTGGGCTTCGTGTCTTCCTGCATTCGCGAGACTGAAGGAGATATTACACAGCGCTTGTGTACAGCAGCAGAAATAAAGTTCTACTTAAATAGTTTATTTGAGGGATCTACTTATTTAAAGCCGAATGGGAACTGCAACTTAACCTCATGGGTCTCTGGTTGTGAGCCAGGATGGGCCTGCAGTGTTCCATCAAGCCAGCAGGTTGACCTTAGAAATTCACACGAGATGCCTTCCAGAACTACAAACTGTCAAGCATGTTGTGAGGGTTTCTTCTGTCCTCATGGCATCACATGCATGATACCTTGCCCTCTAGGTTCCTATTGTCCTGTTGCTACACTCAATAACTCTACTGGTGTATGTGAACCATATCATTATCAACTGCCTCCAATGCAGCCAAACCATACCTGTGGAGGAGCAAATATTTGGGCTGATGTCAGTCGCAGTAGTGAGATATTTTGTTCAGCAGGATCGTATTGCTCTACAACTACCAAAGAAACTTCTTGCAGTAGTGGGCATTACTGCAGGATGGGTTCTACAGCTGAGAAAAGATGCTTCAAGACGAGTTCATGTAATTCAAACACTGTGACCCAAAATATGCATGTATATGGAGTTATGCTCATTGTTGCTCTGAGTACATTGCTGCTCATTATTTACGGCTGTTCTGACCAGGTTCTCTCTACTAGGGAAAGGAGAATGGCAAAGTCCAGAGAAGCAGCGGCAAGAAGTGTAAGGAAGACTACAAGTGCCCGCCGAAGATGGAAAGCTGCAAAAGATGTTGCTAAGAAGGGTGCAAGTGGACTACAAGCTCAAATATCACAAAAACTCTCTTGTATAAAGGATGTGGACAACCCAGAATATGCATATGATGCTACAGAAACAGATATCGAATTGTTTCCTTGTTCACATCAAAGTGCTTCAATCAAGAGTGCTAGTTCTTCTGCAGTTCCAAAGGAAAAAGGAAAAGATCCCAATAACCTGATGCAGATGATGCATGAAATTGAAAATGATCCAGATATTAGTAAAAACTTTTTTGTTCAAATAGAAGTTAGAGATAAAAATTCTATAGCAAAAGTTTCCAATGAAAAACAGCTGCATACACATAGCCAAATTTTTAAGTATGCATATACTCAACTTGAGAAAGAGAAAGCTCAGCAACAAGATAACAAGAACCTTACCTTCTCAGGAGTGATTAGTATGGCTACCAAGACCGAACAGAGGACAAGGCCTTTAATTGAAATTTCTTTCAAAGATCTAACTCTCTCTTTGAAAGCACAAAACAAACATATATTGAGATGTGTTACTGGGAAAATTAAACCTGGCCACATCACTGCTGTCATGGGTCCATCAGGTGCTGGCAAGACAACATTTCTTTCAGCAATAGCGGGAAAGGCACTTGGATGCAAGGTAACTGGTTCCATATTCATTAATGGGAAGAATGAATCAATCCAATCCTACAAGAAAATTATGGGCTTTGTGCCACAAGATGATATAGTTCATGGAAACCTGACAGTGGAAGAGAATTTCCGTTTCAGTGCACAGTGCAGGTTATCTGCGGACTTGTCAAAACCAAACAAAGTTCTCGTTGTTGAAAGAGTCATTGAATTCTTGGGGCTTCAGTCGGTGCGAAATTCTTTGGTTGGAACTGTAGAAAAGAGAGGGATCTCTGGCGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTCATGGAACCTTCTCTTTTGATCTTGGATGAACCCACATCTGGTTTGGACAGTGCATCATCTCTGCTCCTTCTTAGAGCACTAAGACGTGAAGCTCTTGAAGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTATGGCTTGTTTAAAATGTTTGATGATTTGATACTCCTGGCAAAAGGCGGTCTTACTGTATATCATGGATCAGTTAAGAAAGCTGAAGAATACTTTGCAGGCCTTGGAATAATTATACCTGAGCGCATTAATCCTCCAGATTACTTCATTGACATTCTAGAGGGCATAGCTGTACCTAGTGGAAATTCAGGAGTCAGTTGTAAAGAGCTTCCAGTTAGATGGATGATTCATAATGGCTACCCTGTACCTCTTGATATGCGGCAGAATGCAGCACAATTTGATATGTACTTAACAGAAATCCCGGTTAAAGAAACAGATCCTGATAGCTCTAGCCATGCTGAAAGAAGCTTTGCTGGAGAATTATGTCAAGATGTGAGAAATGTTGTAGAACTCAAGAGGGAAGAAATAAGACTCAACTTTTTAAAATCGAACGATTTATCTAACCGGAAGACTCCTGGTATGTTCAAGCAATACAAGTACTTCCTTATAAGGGTCCGGAAGCAGCGATTACGGGAAGCTAAGATCCAAGCCGTAGATTATTTAATATTATTACTTGCTGGAGCATGCTTAGGATCGCTTACTAAAGCAAGTGATCTGACCTTTGGTGCTGCTGGATACACCTATACAGTGATTGGTGTATCTCTTTTATGCAAAATAGCGGCATTAAGAACATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTCTCTAAAGACACAATTGATCATTTTAATACAGTGATCAAGCCTGTGGTGTACCTCTCTATGTTCTATTTCTTTACCAATCCAAGATCAACTTTTGCAGATAATTATATTGTGCTTCTTTGTCTTGTATACTGTGTGACTGGCATAGCATATGCATTGGCCATATTATTTCAACCTGGCACAGCCCAGCTGTGGTCAGTACTTCTTCCAGTTGTCTTAACACTCGTTGCAACACAAACAAATGGTAGTAAATTTTTTAAGGATATAGCTAATTTGTGCTACTCCAAGTGGGCTTTAGAAGCATTCATAATTGCAAATGCTGAGAGGTATGATGGAGTGTGGCTCATAACTCGTTGTGGTTCACTACTAAAAAGTGGCTATAATCTTCATGATTGGAATTTGTGCATATCCATTCTCATGCTAATGGGTGTGATTGCTCGGGCACTAGCATTTTCCTGTATGCTTGCCTTTCAAAAGAAGTAA 3318 0.4099 MRLLQVILCLLVVALRVFLLRGVQCQQQMSSDLDNPAVLSLVTQLVYTQISNLTSLLTQDINARSTFCVKDPDGDWDKAFNFSSDLGFVSSCIRETEGDITQRLCTAAEIKFYLNSLFEGSTYLKPNGNCNLTSWVSGCEPGWACSVPSSQQVDLRNSHEMPSRTTNCQACCEGFFCPHGITCMIPCPLGSYCPVATLNNSTGVCEPYHYQLPPMQPNHTCGGANIWADVSRSSEIFCSAGSYCSTTTKETSCSSGHYCRMGSTAEKRCFKTSSCNSNTVTQNMHVYGVMLIVALSTLLLIIYGCSDQVLSTRERRMAKSREAAARSVRKTTSARRRWKAAKDVAKKGASGLQAQISQKLSCIKDVDNPEYAYDATETDIELFPCSHQSASIKSASSSAVPKEKGKDPNNLMQMMHEIENDPDISKNFFVQIEVRDKNSIAKVSNEKQLHTHSQIFKYAYTQLEKEKAQQQDNKNLTFSGVISMATKTEQRTRPLIEISFKDLTLSLKAQNKHILRCVTGKIKPGHITAVMGPSGAGKTTFLSAIAGKALGCKVTGSIFINGKNESIQSYKKIMGFVPQDDIVHGNLTVEENFRFSAQCRLSADLSKPNKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSLLLLRALRREALEGVNICMVVHQPSYGLFKMFDDLILLAKGGLTVYHGSVKKAEEYFAGLGIIIPERINPPDYFIDILEGIAVPSGNSGVSCKELPVRWMIHNGYPVPLDMRQNAAQFDMYLTEIPVKETDPDSSSHAERSFAGELCQDVRNVVELKREEIRLNFLKSNDLSNRKTPGMFKQYKYFLIRVRKQRLREAKIQAVDYLILLLAGACLGSLTKASDLTFGAAGYTYTVIGVSLLCKIAALRTFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSTFADNYIVLLCLVYCVTGIAYALAILFQPGTAQLWSVLLPVVLTLVATQTNGSKFFKDIANLCYSKWALEAFIIANAERYDGVWLITRCGSLLKSGYNLHDWNLCISILMLMGVIARALAFSCMLAFQKK* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0197 1105 ProSitePatterns ABC transporters family signature. 639 653 IPR017871 GO:0005524
Lja6g0197 1105 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 32 1102 - -
Lja6g0197 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 730 IPR027417 -
Lja6g0197 1105 SMART AAA_5 524 716 IPR003593 -
Lja6g0197 1105 Pfam ABC-2 type transporter 696 1105 IPR043926 GO:0140359
Lja6g0197 1105 Pfam ABC transporter 517 667 IPR003439 GO:0005524
Lja6g0197 1105 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 740 IPR003439 GO:0005524
Lja6g0197 1105 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 1102 - -
Lja6g0197 1105 CDD ABCG_EPDR 496 722 - -
Lja6g0197 1105 Gene3D - 484 734 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0197 Lja-Chr6 3845146 3855621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0197 486 699 Calmodulin-binding Proteins AT2G36910 26.484 8.65e-13 71.2