Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0178 ATGGCACCGCCATTTGGGAGAAATCATGGAAAAGAGTCATCATCGTCCATGGTGTCTCAGAAGACTCTTACTTTAATTGCTTCTTCTGAGAAGAAAAAGAAACGAGACTCTCTGGAAGACAGAAATGTGAGAAAAGCACTAGAAGCATTTAGAGAATTGTCTTCCAAACTTTTCAATGAACTGATAGCAAAGAATCCTGGACAACCGGGAGCAAAACTAAAAGCTCTGTGGAAGGCAATGAGTATAATGAAAGCTAAGGATGAGGTTGAAAACAATGAAAAGCGAGTGGGACCTCTCGAAGGAATTCAAGTGGGTGACAAATTCAACTACAGGGCTGAACTTGTTGTTACTGGCCTCCACCAGCAACCTCATAGTGGAATTGATTATGTCCACAACATAAACCAAGTTTTGGCAACGAGCATTGTTGTTACTAATCGTTATGCTAACATGTTCCACAATGGCTCATTGGTCTACATAGGTGAGGGAGGGAACCCTGATTCCAGAATAAATGGTGGTTCTTCTCATGATCAGAAATTGGAGCGAGGGAATCTCGCTTTGAGAAACAGCATGGAAGCCAGAAGTCCTGTTAGGGTGATATTGAAAGTTTCTGAAAATTTTGTTGATGACAATGGCAATAGCTCTAATTTCGCTTTTGTCTACGATGGACTATATTTGGTGACAGGTTTTGCCCGAGGAAGGGGTGAAAATGGGAGACTTGTGTTCAAGTTTACATTGAATAGAATGCCAAATCAACCCCCCACCTGTGTTTCCCATGGAGATTTGGGTTTTAAAGGGTCATTTACTTCAAGTTCTAGCACTCACAAGAGATCTAAAGGAAGTTCAATTGCGCAAAAGGAGAAGGCTCGAAGGAATGATGTTTCTGAGGATTGCAGGGAAGACAAGGTTGTAAAACCTTTGAGTTCTCGTATCTCGTGGGTGTTTCAAGAATGCTAG 954 0.4172 MAPPFGRNHGKESSSSMVSQKTLTLIASSEKKKKRDSLEDRNVRKALEAFRELSSKLFNELIAKNPGQPGAKLKALWKAMSIMKAKDEVENNEKRVGPLEGIQVGDKFNYRAELVVTGLHQQPHSGIDYVHNINQVLATSIVVTNRYANMFHNGSLVYIGEGGNPDSRINGGSSHDQKLERGNLALRNSMEARSPVRVILKVSENFVDDNGNSSNFAFVYDGLYLVTGFARGRGENGRLVFKFTLNRMPNQPPTCVSHGDLGFKGSFTSSSSTHKRSKGSSIAQKEKARRNDVSEDCREDKVVKPLSSRISWVFQEC* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0178 317 MobiDBLite consensus disorder prediction 279 296 - -
Lja6g0178 317 Pfam SAD/SRA domain 96 251 IPR003105 -
Lja6g0178 317 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 26 262 - -
Lja6g0178 317 PANTHER - 26 262 - -
Lja6g0178 317 SMART G9a_1 92 251 IPR003105 -
Lja6g0178 317 ProSiteProfiles YDG domain profile. 97 247 IPR003105 -
Lja6g0178 317 MobiDBLite consensus disorder prediction 267 296 - -
Lja6g0178 317 SUPERFAMILY PUA domain-like 79 256 IPR015947 -
Lja6g0178 317 MobiDBLite consensus disorder prediction 1 39 - -
Lja6g0178 317 MobiDBLite consensus disorder prediction 9 26 - -
Lja6g0178 317 Gene3D - 79 266 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0178 Lja-Chr6 3445125 3447677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0178 75 253 Su(var)3-9 homologs AT1G73100 39.130 3.19e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0178 - - lja:Lj6g3v0156120.1 543.502