Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0177 ATGGAACCGTTTTGGAGAAATCATGGAAAAGGGTCATCATATTCATCTGTGGTTTCTTATAAAGGAGTCTCTCTGAAACACAAAAAGGTGAACAAAGCATTGTCAGTGTTTAGGAAATTGTCCTCCAAACTTTTTGATGAACTCAAAGCCGAGAACCCTCGAGATTCTGGAGCGAAATTTAAAGCCCTGTGTAACGCGGCGAAGATAATGAGCGATAAGCATGCGTGTGAAAACACGAAAAAGCGAGTCGGAGTTGTGGAAGGAATTGAGATTGGTGACAAGTTTCAATACAGGGCTGAACTTGTCATTATTGGCCTCCACCTTCAGCATTCAAGTGGTATTGATTATATGGGGAAGGGTGAGAGCTCGTTGGCAACAAGCATTGTGGTAACCAAACGCTATGCTAACACGATAAACCCTAATGGTTCCTTGGTTTACATAGGTCAGGGAGGGAACTCTGCTGCAGGAAGAAATGTTCTGTCCCATGATCAGAAGTTGGAGGGTGGGAATCTTGCTATGAAAAATAGCATGGATGCTAGAAGTCCTGTGAGGGTGATATTGAAAGTTTTTGGGAGTTCTGATTATGAGAGTGAGAATGAGAGTGACAACAGCTCTATGTTCTCATATATTTATGATGGACTGTATTGGGTGACTGATTTTACCCAAGGCAGGGGTAACAATGGGAAACTTGTGTTCAAGTTCACATTGGATAGAATGTTAAATCAACCCCAAAGCTGTGTTGCTCATGGAGATTTGGGTTTGAAAGGGTCGTCTGCTTCAAGTTCTAGTACTCACAAGAGATCAAAAGGTAGTTCATCAGCAGCACAAAAGGAGAAGACTCGAAGGAATGATGTTTCTGAGGGTAAAGAAAACTTTGCTATTCCGTTGATGGCAACAAGTGACTGTGCTGAATTTCCTCCACCTTTTGAATACATAGTCGATTTAGTCTATTCAGGGAGGTTGAGCTTGATGCAGCAGCCAAATCCAAAAGATTCGCGTGCTCCATTCCAGCTAGCCATTTATAAGACGGAAAGGAAGGGTTGGGGTGTTAGAACCCGGTCGTACATTCCATCTGGAAGCTTTGTGTGTGAGTTCATTGGGGAAGTTCATCACTATGGATCAAAAGCTGGATTAAGGTTAGGTGTTGATAACTATATACTTGACATGGGTGCTGGCAAGGGATTCATCGATGCAACGAGATATGGAAACATTGCGAGATTTATAAATCATAGCTGTTCTCCTAATCTCTGTATCAGTGATGTTGTGTATGATCACAATGATAAGAGCCTTCCCCACAAGATGCTGTATGCTGTGAGGGACATTCCTGCTGGGAGAGAGCTCAGTTATGATTATAATTCCTGCAACAGAAAACTTATTAAGGCTGACAAAATTAAGTGCTTCTGTGCTTCACAGGAATGCAAAGGATATATTTATATTTGA 1440 0.4188 MEPFWRNHGKGSSYSSVVSYKGVSLKHKKVNKALSVFRKLSSKLFDELKAENPRDSGAKFKALCNAAKIMSDKHACENTKKRVGVVEGIEIGDKFQYRAELVIIGLHLQHSSGIDYMGKGESSLATSIVVTKRYANTINPNGSLVYIGQGGNSAAGRNVLSHDQKLEGGNLAMKNSMDARSPVRVILKVFGSSDYESENESDNSSMFSYIYDGLYWVTDFTQGRGNNGKLVFKFTLDRMLNQPQSCVAHGDLGLKGSSASSSSTHKRSKGSSSAAQKEKTRRNDVSEGKENFAIPLMATSDCAEFPPPFEYIVDLVYSGRLSLMQQPNPKDSRAPFQLAIYKTERKGWGVRTRSYIPSGSFVCEFIGEVHHYGSKAGLRLGVDNYILDMGAGKGFIDATRYGNIARFINHSCSPNLCISDVVYDHNDKSLPHKMLYAVRDIPAGRELSYDYNSCNRKLIKADKIKCFCASQECKGYIYI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0177 479 Gene3D - 65 257 IPR036987 -
Lja6g0177 479 MobiDBLite consensus disorder prediction 271 286 - -
Lja6g0177 479 Pfam SAD/SRA domain 83 242 IPR003105 -
Lja6g0177 479 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 18 319 - -
Lja6g0177 479 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 334 475 - -
Lja6g0177 479 SUPERFAMILY SET domain 276 460 IPR046341 -
Lja6g0177 479 SUPERFAMILY PUA domain-like 66 245 IPR015947 -
Lja6g0177 479 SMART G9a_1 79 242 IPR003105 -
Lja6g0177 479 ProSiteProfiles YDG domain profile. 84 238 IPR003105 -
Lja6g0177 479 ProSiteProfiles Post-SET domain profile. 462 478 IPR003616 -
Lja6g0177 479 SMART set_7 336 458 IPR001214 GO:0005515
Lja6g0177 479 ProSiteProfiles SET domain profile. 336 452 IPR001214 GO:0005515
Lja6g0177 479 MobiDBLite consensus disorder prediction 257 286 - -
Lja6g0177 479 Gene3D SET domain 276 477 IPR046341 -
Lja6g0177 479 Pfam SET domain 347 452 IPR001214 GO:0005515
Lja6g0177 479 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 18 319 - -
Lja6g0177 479 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 334 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0177 Lja-Chr6 3420602 3422135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0177 62 475 Su(var)3-9 homologs AT1G73100 29.555 1.88e-53 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja6g0177 SAD_SRA 1.3e-37 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0177 - K11420 lja:Lj6g3v0156100.1 941.414