Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0174 ATGGGCTCCGTTGAGAATTACCATGTCATCGAGCTCGTCGGCGAGGGTTCCTTTGGCAAGGTCTACAAAGGGAGGCGCAAGCACACCGGAAAGACCGTTGCGATGAAGTTCATCATGAAGCATGGCAAAACCGACAAGGACATTCACAATTTGAGGCAAGAAATCGAGATCTTAAGGAAGTTGAAGCATGAAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAGTTTTGTGTTGTCACCGAATTTGCACAGGGTGAGTTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCTGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTAAAAGCCTTACATTATCTGCACTCCAACCGGATCATTCATCGTGATATGAAGCCCCAAAATATTCTCATTGGTTCTGGATCTGTTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCCACAAATACAGTTGTTTTGCGATCCATAAAAGGCACTCCATTATATATGGCCCCAGAGCTTGTACGGGAACAGCCTTACACCCACACTGTAGATTTATGGTCTCTTGGCGTTATATTGTACGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGGCACATTGTGAAGGATCCGGTTAAATATCCAGATAGCATGAGCCCAAATTTCAAGAGCTTTTTAAAGGGTTTACTTAACAAGGCACCAGAAAGTCGACTAACTTGGCCAGCTCTTCTTGAACACCCATTTGTTAAAGAAACGTCTGATGATCCTGAAGCCAGGGTGTTGCATGAGATAACTGGTTCAGCTGGAAATAGTGATACAGCACAGAGGGTCGAAGGAAAAACCATTCAAATTGCAACAGTCAAAAACAATCATACAAAACGTTTGGAGGAGCATATTGCGTCACCACTCCACGCTGAAGCTCAGTTAAATGGTTCTAACATAAAGAAAACCAATTCTTCATTGCTTGATGAGTCCCCAGGATTTTCTAATGAAAATGCTACTGGAGAATCAGGTTGCCAAAGATTGGACAGACTTGAAAACAACTCTCGCACAGTCAAAGGTGCAAAAACAATTGGTCAAGATAATGAAGCATTGGGACATATTCTGGTACCACTGAAGAAGTGGTCAAAGGGATCACAAAATACTTGCAGTGATCAAGATATTCCTGATTCGAACCAGTCATTGAGGATTCTCTTAAACCTAGTTGCGGCTGGGGCTATCAATTCTAGTGGATGTGTAGACGAACTAATAAGTGAACTCCTCTTCTTTACTAAATCTGTTATAACCATGAAATCCGTTGAAGTTATTGACTTGATAACCAAGAGTTTCTCTATCACTAAAGTTTTACTAGATAATGGAGGGAATTGTACTTCAAGCTCTTATCTAAATCACTGGGTCGAATTTCTTGAAATCTATTCTCAGGTTGTAAATTCAACAAATGATGCATCTGGAAGAGTTCTGTTTGAGTCTAGTGCTTGCATTACAGTCATGCTCTCTAAAGTTGCTCAGGTGCTTAGATCTTGTCCTCAAAGTACAAGCCCAGGGACACTAAATGAAACAGCTAACAGAATTATGGAGCATGCGAAAACATCTGGTTTAGTGGACCATTTGTGTCTGTGTTTAGCCACTTCTGGTTCGAGTCTTATTTCAGGTTCTTCCAATATGCTACGGGCTGCTTCTGAAGCATGCAGAGCTGTCTGGTCTTTGATTAATGCACTGGATATCCTTTTTATGAAGACAAGTGCCATTTTGTTTCCCATAAATGCTTTGCGGACTCATTCCAATGAGCAAGATCCCTTGTTTGGAGCAGAATCTACAAAAATTGTTGATGCAATGACAAGAGCATTCCTGAAATCCAAAGCTGTTCAGGTTGCTGTTTACTATTGTTTTCACCAACGTCTTGAGTCTGCAATGGGTTGTTGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAGTGGAATTGTTCCAGCTCTTCTTTGTGGTCTGCCGAGTTCGCTTCCTGTGACTACTGTTGTTAGTGGTGGTGGTGATGGAACTATTGTTTCAGAGATTTTCTCTGTTTTGTCATTATGCAGTTCGTCTCTTAATAAAGATTCACAGAGTGTAGAACCAAGTAATGCTAAATGCAAATTAACAAATCCTTCTTCTGTGGTTCGTCATTCATGTCTAATTCTTGCAACAATTGCACAATGTTTGAAGTCAACCGGAAGAAATTCAGCAATTTTCATTCTCACTACCTCTCCAAAGAAGCAGCTTGCTCGACTTTCATTGCTTGCACATTATATTTCTTCTGACGATAAATCGAAAGCCTGTTTCCAACCTCAAAGTGCATCTGCCATGTTGGCTTTGGCGTCCATTCTATGCCTCGAATCTGGGGCTTTGGTTGAGTCTCCGATATCTGAAATTGCTATGCCCTTAATTCCTCGAACTTCTACACTTAGTGACCATGTTAAATTTTCATCTGGAAATGAAAATGATTTGGACTCTGACAATTTCAGTGGGAAGCTTTCATATTGGCAAGGGGTAAGAGATGGCTGTGTTGGGCTTTTAGATTCCAAACTCAAGTTGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTATACCCCTTCTTCTTATGGGCTTATTAAGCAATGACTTCTTAAATGCTTCTGAAGGAAACGAGCACCTAAATGATAGAGTTGGATTATCTCCTATTGGTGTTGTATGGACAATTTCATCACTATGCCATAGTCTTTCTGGTGGTGCTGTGACTTTTCGTCAGGTTTTGATTAGGAATGAACATGTTAAGCTCATCTCCAAATTAATATGTGATGTTCATCTAAAGTTGATAAACTGCTGGACCGGACCTGGTGGAGGGAGGGCAGGAGTCAGAGATCTAATAAATGCAGTAATAGATCTCTTAGCTTTTCCTTTTTTTGCTCTGCAAAATGCACCTGGCATTCCATCAGCTACTGCTTCTGTCAGCAGCGGGTTTCTTCTTAATGCTGGTTCCCCCGGTCAGAGAGTATGCGTGGAAGACAAGGATATAGTTAAGGCAATAGAAGAAGATATGGGCAAGTACACTAAGATCCTTGTGGAGGTGGGTGTGCCTGGTATTATACTTCGATGCCTAGATCATATGGAATTGAACGATTTGGGAAGGCCTGTGGCCTTTCTTGCTAAAATGGTATTGCATCGGCCTTTAGCAGTACAACTTGCGGATAAAGGTCTTCTGGATTCAAATAGGATGAGAAGATTGTTTGATCATTCAGCCCCAAAAGAGGTCACACTAGATGCTCTTATGATAATTTCTGATTTTGCTCGCATGGACAAGAGATTCTACGAGTACATCAAAGCTGCTTCTATTTTGGAGTTCTTAAAGGCCTTTCTTTCGCATGAGGATCCCAACATACGTGCCAAATCTTGCAGTGCTCTTGGAAACATGTGTCGCCACAGCGCCTACTTTTATAGTTCACTTGCAAGACATCAAATTGTTAGTATCCTTATCGATCGGTGTTCTGATCCGGACAAACGCACACGCAAGTTTGCTTGTTTTGCTATTGGAAATGCGGCCTATCACACTGACATGTTGTATGAAGAGTTGAGGAGGTCGATTCCTCATTTATCAAATTTATTGCAAATGGCAGAGGAGGACAAGACTAAGGCAAATGCAGCAGGTGCGCTTAGCAATCTGGTTCGCAATTCGGAGAAACTTTGTGAAGATATTGTGTCCAAAGGCGCGATTCAGTCTCTCCTGAAGTTAATTTCTGATTGTGCGGTAGTAGCACTAAATCCAAGCAGAAATGATTCAGCAAGTGAATCTCCTTTAAAGATAGCCCTCTTTTCCCTAGCAAAGATGTGTGCACATCCACTCTGCAGACAGTTCATACGTTCATCACCTTTGTCGCCTGTGATTAGTAGGCTTCAGCAGTCTCCAGAATCATCTATTGCCAAATATGCTTCTATAATCATTGGCAAAGTTTCTTAA 3999 0.4141 MGSVENYHVIELVGEGSFGKVYKGRRKHTGKTVAMKFIMKHGKTDKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGSGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYTHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDSMSPNFKSFLKGLLNKAPESRLTWPALLEHPFVKETSDDPEARVLHEITGSAGNSDTAQRVEGKTIQIATVKNNHTKRLEEHIASPLHAEAQLNGSNIKKTNSSLLDESPGFSNENATGESGCQRLDRLENNSRTVKGAKTIGQDNEALGHILVPLKKWSKGSQNTCSDQDIPDSNQSLRILLNLVAAGAINSSGCVDELISELLFFTKSVITMKSVEVIDLITKSFSITKVLLDNGGNCTSSSYLNHWVEFLEIYSQVVNSTNDASGRVLFESSACITVMLSKVAQVLRSCPQSTSPGTLNETANRIMEHAKTSGLVDHLCLCLATSGSSLISGSSNMLRAASEACRAVWSLINALDILFMKTSAILFPINALRTHSNEQDPLFGAESTKIVDAMTRAFLKSKAVQVAVYYCFHQRLESAMGCCLQLLSRCCLHSGIVPALLCGLPSSLPVTTVVSGGGDGTIVSEIFSVLSLCSSSLNKDSQSVEPSNAKCKLTNPSSVVRHSCLILATIAQCLKSTGRNSAIFILTTSPKKQLARLSLLAHYISSDDKSKACFQPQSASAMLALASILCLESGALVESPISEIAMPLIPRTSTLSDHVKFSSGNENDLDSDNFSGKLSYWQGVRDGCVGLLDSKLKLGGPLAVQQLCASGIPLLLMGLLSNDFLNASEGNEHLNDRVGLSPIGVVWTISSLCHSLSGGAVTFRQVLIRNEHVKLISKLICDVHLKLINCWTGPGGGRAGVRDLINAVIDLLAFPFFALQNAPGIPSATASVSSGFLLNAGSPGQRVCVEDKDIVKAIEEDMGKYTKILVEVGVPGIILRCLDHMELNDLGRPVAFLAKMVLHRPLAVQLADKGLLDSNRMRRLFDHSAPKEVTLDALMIISDFARMDKRFYEYIKAASILEFLKAFLSHEDPNIRAKSCSALGNMCRHSAYFYSSLARHQIVSILIDRCSDPDKRTRKFACFAIGNAAYHTDMLYEELRRSIPHLSNLLQMAEEDKTKANAAGALSNLVRNSEKLCEDIVSKGAIQSLLKLISDCAVVALNPSRNDSASESPLKIALFSLAKMCAHPLCRQFIRSSPLSPVISRLQQSPESSIAKYASIIIGKVS* 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0174 1332 Gene3D Transferase(Phosphotransferase) domain 1 2 329 - -
Lja6g0174 1332 SUPERFAMILY ARM repeat 1027 1331 IPR016024 -
Lja6g0174 1332 Coils Coil 1202 1222 - -
Lja6g0174 1332 ProSiteProfiles Protein kinase domain profile. 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0174 1332 CDD STKc_STK36 5 257 - -
Lja6g0174 1332 Gene3D - 1069 1330 IPR011989 -
Lja6g0174 1332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lja6g0174 1332 Pfam HEAT repeats 1128 1232 - -
Lja6g0174 1332 SUPERFAMILY Protein kinase-like (PK-like) 5 258 IPR011009 -
Lja6g0174 1332 SMART serkin_6 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0174 1332 SMART arm_5 1238 1292 IPR000225 GO:0005515
Lja6g0174 1332 SMART arm_5 1198 1237 IPR000225 GO:0005515
Lja6g0174 1332 SMART arm_5 1114 1154 IPR000225 GO:0005515
Lja6g0174 1332 Pfam Protein kinase domain 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0174 1332 PANTHER PROTEIN KINASE RELATED 1 1331 IPR045193 GO:0004674
Lja6g0174 1332 ProSitePatterns Protein kinases ATP-binding region signature. 13 40 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0174 Lja-Chr6 3165406 3184820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0174 4 246 AGC Kinase Gene Family AT3G08720 38.367 5.76e-45 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Lja6g0174 Pkinase 1.7e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0174 K06228 - gmx:100792102 2192.16