LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g0172	ATGCAAACCTTTGAGCCTAGCTTCACTTTTTGCACCCCACAAACCTCAATTTTAGAACCCCTCAACTCTGATATCAGTATCAGTGATTACTTTCTACCCCAACAAGTTGTTCCCAGTTTCTCCAAGCCTCCAAGATCTTCCTCAAATCTAAGCAACCGCAAACCCTCTTTAAACATCTCAATCCCTTCAATAAACTCAGGTCTCAAATCCAATATCTCACAGAGCAAAGAAACAAGCTTTTCCCATCAGAGCTCTTCTTCTTCTTCTTCAAGTGACCACCAAACCCAAGAGGAGGACAATAACAAGCACTACAGAGGTGTTAGAAGGCGACCATGGGGGAAATTTGCAGCAGAGATTCGTGACCCCAATAGAAAAGGGTCAAGGGTGTGGCTTGGGACTTTTGACACAGCCATTGAAGCTGCTAAAGCTTATGACAGAGCTGCTTTTAAGATGAGAGGAAGCAGGGCTATACTGAACTTCCCTCTTGAAGTTGGTAATTGTCATGAAGAAGAAGAATCATCAGTTGTTAATGTTGGTGAGAAGAGGATTAGAGAAGAAGACAAGTGTGTGGAGGAGAGTGTTACTGTTAAGAAGCAGGTGAAGAAAGAAGAGTGCTCTGATCCCAATAATGGGGTTTCTGTTTCTGCAGCAACAGTTTGCCCTTTAACTCCCTCATTGTGGAAAGGGTTTTGGGACACTGATGTCAAGGGAACTATCTTCAGTGTGCCTCCTTTGTCACCCTTATCTCCACTCATGGTTGTTTGA	765	0.4353	MQTFEPSFTFCTPQTSILEPLNSDISISDYFLPQQVVPSFSKPPRSSSNLSNRKPSLNISIPSINSGLKSNISQSKETSFSHQSSSSSSSSDHQTQEEDNNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSRAILNFPLEVGNCHEEEESSVVNVGEKRIREEDKCVEESVTVKKQVKKEECSDPNNGVSVSAATVCPLTPSLWKGFWDTDVKGTIFSVPPLSPLSPLMVV*	255

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g0172	254	PRINTS	Ethylene responsive element binding protein signature	127	143	IPR001471	GO:0003700\|GO:0006355
	Lja6g0172	254	PRINTS	Ethylene responsive element binding protein signature	104	115	IPR001471	GO:0003700\|GO:0006355
	Lja6g0172	254	Gene3D	AP2/ERF domain	102	163	IPR036955	GO:0003700\|GO:0006355
	Lja6g0172	254	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	41	243	-	-
	Lja6g0172	254	MobiDBLite	consensus disorder prediction	40	94	-	-
	Lja6g0172	254	CDD	AP2	102	161	IPR001471	GO:0003700\|GO:0006355
	Lja6g0172	254	Pfam	AP2 domain	103	153	IPR001471	GO:0003700\|GO:0006355
	Lja6g0172	254	ProSiteProfiles	AP2/ERF domain profile.	103	161	IPR001471	GO:0003700\|GO:0006355
	Lja6g0172	254	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6	41	243	-	-
	Lja6g0172	254	SMART	rav1_2	103	167	IPR001471	GO:0003700\|GO:0006355
	Lja6g0172	254	MobiDBLite	consensus disorder prediction	40	107	-	-
	Lja6g0172	254	SUPERFAMILY	DNA-binding domain	103	163	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g0172	Lja-Chr6	3134646	3136008	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g0172	97	247	AP2-EREBP Transcription Factor Family	AT5G51190	57.325	1.42e-53	171

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lja6g0172		AP2	2.6e-16	CL0081