Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0172 ATGCAAACCTTTGAGCCTAGCTTCACTTTTTGCACCCCACAAACCTCAATTTTAGAACCCCTCAACTCTGATATCAGTATCAGTGATTACTTTCTACCCCAACAAGTTGTTCCCAGTTTCTCCAAGCCTCCAAGATCTTCCTCAAATCTAAGCAACCGCAAACCCTCTTTAAACATCTCAATCCCTTCAATAAACTCAGGTCTCAAATCCAATATCTCACAGAGCAAAGAAACAAGCTTTTCCCATCAGAGCTCTTCTTCTTCTTCTTCAAGTGACCACCAAACCCAAGAGGAGGACAATAACAAGCACTACAGAGGTGTTAGAAGGCGACCATGGGGGAAATTTGCAGCAGAGATTCGTGACCCCAATAGAAAAGGGTCAAGGGTGTGGCTTGGGACTTTTGACACAGCCATTGAAGCTGCTAAAGCTTATGACAGAGCTGCTTTTAAGATGAGAGGAAGCAGGGCTATACTGAACTTCCCTCTTGAAGTTGGTAATTGTCATGAAGAAGAAGAATCATCAGTTGTTAATGTTGGTGAGAAGAGGATTAGAGAAGAAGACAAGTGTGTGGAGGAGAGTGTTACTGTTAAGAAGCAGGTGAAGAAAGAAGAGTGCTCTGATCCCAATAATGGGGTTTCTGTTTCTGCAGCAACAGTTTGCCCTTTAACTCCCTCATTGTGGAAAGGGTTTTGGGACACTGATGTCAAGGGAACTATCTTCAGTGTGCCTCCTTTGTCACCCTTATCTCCACTCATGGTTGTTTGA 765 0.4353 MQTFEPSFTFCTPQTSILEPLNSDISISDYFLPQQVVPSFSKPPRSSSNLSNRKPSLNISIPSINSGLKSNISQSKETSFSHQSSSSSSSSDHQTQEEDNNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSRAILNFPLEVGNCHEEEESSVVNVGEKRIREEDKCVEESVTVKKQVKKEECSDPNNGVSVSAATVCPLTPSLWKGFWDTDVKGTIFSVPPLSPLSPLMVV* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0172 254 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Lja6g0172 254 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Lja6g0172 254 Gene3D AP2/ERF domain 102 163 IPR036955 GO:0003700|GO:0006355
Lja6g0172 254 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 41 243 - -
Lja6g0172 254 MobiDBLite consensus disorder prediction 40 94 - -
Lja6g0172 254 CDD AP2 102 161 IPR001471 GO:0003700|GO:0006355
Lja6g0172 254 Pfam AP2 domain 103 153 IPR001471 GO:0003700|GO:0006355
Lja6g0172 254 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Lja6g0172 254 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 41 243 - -
Lja6g0172 254 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Lja6g0172 254 MobiDBLite consensus disorder prediction 40 107 - -
Lja6g0172 254 SUPERFAMILY DNA-binding domain 103 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0172 Lja-Chr6 3134646 3136008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0172 97 247 AP2-EREBP Transcription Factor Family AT5G51190 57.325 1.42e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja6g0172 AP2 2.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0172 K09286 - gmx:100795866 229.95