Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0150 ATGGCAGGCATTAATAATATCTCAGCATATGCTCATAGCCCTGTCCACAAGGCCATAATATTGAAGGATCATGCTAAACTTAAGGAGATAGTTGCAGTTCTTCCCAAACTTAGTAGTCCTTATGAGATCAAAACTGAGGCTGCCTCAATTGCTGAGGATGAGAAGGCGTCTGCAATTTCTGCTGTAGTAAATAGGAGGGATGTGCCAAATGGTGACACTCCTCTTCACTTAGCTGCAAAAATTGGCGATCCGGTAGCTGCGGAAATGCTCATGGATGCCGGGGCAAATAGTAGCTTGAAGAACAAGGAAGGATGGAGTGCTCTTAGAGAAGCTATCATTAACAAACAAGATAAAGTTGCAATGGTTATGATCAAGTATTCTTGGAATGATGTGAATGAGAAATGGCATAGGAGATTGCCGCGTTATATTGCAACCATGAGAAGGATGAGGGACTTCTACATGGAGATCACGTTCCATTTTGAGAGTTCTGTGATACCTTTCATCTCAAGGGTTGCACCTTCAGACACTTACAAGATTTGGAAAAGGGGTGGGAACATGAGGGCAGACATGACTCTGGCTGGTTTTGATGGTTTGAAAATCAAGAGGTCTGATCAGAGTCTTTTTTTCCTTGGAGATGGGTTAGATGATGAAAGGGAAATCAAACTCCCAGGATTATTGTGCCAGGTCTCACACAAGAAGAAGGAAGTGAAAGTTTCTCATTTATATGCTGAACCTACAAAACCAAATGATAGGCAAGTTAAGCAAAGGTTGGAGAGGAAGTGCAAGGAGAAAACAGTGAGGGTTGGGATTGATGTGAGTCAAGCAGTTCTTGTTCCCCAAATGACATGGAGGAGGAAGGAGAAGAAAGAAATAGTGGGGCCATGGAAATCTAAGGTGTATGAAATGCAAAATGTGGTTCTGAGTGTGAAATCCAAAAGGCCTCCTGGAGCTCCTCCTCCAACTGAGGCTAAGTTAACTCAAAAAGAAGAAATCAAGAAGAAGGAAGATGAAAAGATTGATGACATTTTGACAGCAGAAGAAAGAAAGCAATTTGAAGCAGCATGGAATTCATCAGAAGAAAATGATCTTCATCACAAAGATAATAATGTAATGAAAGAAAAGAAAGTAAGGTCTAGTAGACATAATAGAGAAAAGGAGCACCACCACAAGGGGAAAAGCACCACCAATGCAATGAGTTCTGCTAGCAGCAGTACTAGCCAGAAGGATGAAAATGGTGAAAGTGAGTATAAGAGAGGGATGATGCCTGTTCTTTGGCTTTCTCCAAGCTTTCCACTGAAAATTGAAGAATTGTTACCGTTGCTTGACATTATTGCAGAAAAAGTTAAAGCGGTTCGTCGTTTAAGAGAACTCCTTACAACTAAACTTCCAAAGGAAACCTTTCCTGTCAAGGTTGCAATCCCTGTGGTCTCCACAGTTAGAGTATTGGTGACATTTACAAAGTTTGAAGAAATGCAGCAAGCAGATCAGTTTGAATCAGCCCCATCAAGTCCTACTGGTGGTTCCCAAGAGGATCCAGAAGTGGAACAATCCTCCTCCTCCTCATCATCATCATCATGGTTCCAGTGGATAAAGGCATCTTCCCCTCAATCCAGTTCCTCTGATGCTGAATCCAGTAGTAAAATAGATGATAGACAAGACCCTTTTACCATTCCCTCAGATTATAAATGGCCGGGGAATTCTTGTGGAACCATCGCTCTCCTCCTCCTTGTTAAGTCAAATTTATTCCACCCACCCAGTTCTATTATTTCAAAGATTAAATCTATGTCGCGTAAGAGATACACACAATACTCAACAAGTACGTACACCAAAGTTAAATCATCGTCTATCAAGCTGAAGATCGAGTCCATTGAGCGCAAGCGCAGTGATAAATTCTCATCTCCTCTACTTCCTTGTCTCTCTTCCCCTTCTCTCTCAGTTTCCAATCTCACTACCAATCAGGATATGGCAGAGGATATGGAAATTGATCATATTGTGGATATTCCTGATACCCCAGATAGATCAAATCCTGGGAATGATGATCGGAAATATAGGGGTAATCCTGAGAAGAGGGAGAGGGCTTTTCTTGTTGCTGATGAAATGACTAACAACAGAAACTATATAGCAGTGTCTCCATCAGACAAACCTTATCCTTCTCAGAATGCTTCCATCTTTAGGAAAGCCCGATCTGAAAAAGCTTTTGGACTTGGGATGACACACTCTAATGGAGCTGAAAAGATGGAGAAAGGGAAAACTTTAAGATCCAACTTCCCTTCGAAATTATCTCACCGTGGTCATGTTTCGACTGAAGAGAGTGGACAATTCCAACAACTGAAACCAACTTTCCCGCATTGGATATCAAGAGATAAAGCAACTGAAGACAAGAAAGAGCTGAAATCAAGTATTGGGAACTCTTCAGTACCAGTCAAAGCTGATTCTTCTAATACATCTAGGAATTCCTTCACTGGGAAGTGTACACTAGATAATAGAACACTTCCAGTTCCTAATATATCTGTGGACCGTGGCAAGAGCATTTCTCTATCTAATGATTCTCAATCTCAATTAAAAACTGAAAAGCTAGTGCCTTTGCCACCTCGTTCTTCCACAACTCCAAGAGGCAGAGGGCACAAGAGATTGGTTCGAAATGGGTGCATTTCACCCCACAATATTGCAACAAAGGCAAAACAATCAGCTGAACAGAGCAGACTCCAAACCAATTATGTTGAACAGAACCATGCTGGGGATTCAGTGTCTAGATATACAATGTCACCAACTAGTATTGATGATATAGTTGCTGAAGAGAGAGGCAATGGTAGAAGGAAAGGAAAGGAAGTACTTATTCATCCTTCATCACATTCGGATGGACTCAATGCTGGAAATATTCTCACGGCTAGCAGCCCTTTGATCAATAGTGAAGTGGCCACTGGTACCAGTAATTCAATAAGAAATTCACTTGAATACTCTGAAGAACAAGGTGGTTGGAGAACTACACATAGTGAGAAAAATGCTGATCAACGCTTGTTTGATGTAAATGAGCACCATTCAAGGAGAAATTACGATATTGGAGGCTTTATTAACAGAAAGAATATGAACAGAATCAACAGAAGAGACACTGGGAGAAGTCAAAATGGCAACATCGTTCATGATTCTCTATTAGATCATACTCCTGGACCAACTTCTCGAATCATTCCAGAGGTTGACCTGTCCACTCCTCCTGCTGACAAAAGGCAAAGGAAACGCGAATCAACTTCAGGAAATCCTAATGAAGCATCTCGTAATTCTGAAACTGTATTCCTCAATTCATCTGGGGAATCATCGAGCTCATCTTGGAACCGTGTCTCAGATCCTGAAGTGATTGAGTTGTTATCCACACCTAGGCACACCATCAGACCTGATGATTTAGATGACAATAACAATAGCTTGGATGCTCGGGCAAAACAAGTAGAAGCTGATGAGATATTGGCACGTGAACTTCAAGAGCAACTTTATCATGATGACTTTGTTGATGGCAGAGGGATTGATGAACATTTAGCATGGGAGCTGCAGAATGCGGAGGATCATCAGGATACATCTATTGATATGCACCATATATCTCATCCAACATGGTTTCCAAGGGCTAATGGGCAGTCCCGTTCACGGTCTCACCACAATCCTTCAAATAGGAGGAGACATGTCTCTCAAAATCATATATCCAGCAGAATGTCACAGTTGCGGAGTCGTATTACAAACCGATCTTCAACATCTAGAGGAAGAAGCCCTCTGTTTCCTATAGATATGGACTTAGACATGAGACTTGACATATTGGAAGCATTGGAGGATGCAGTTGGGGATCTTAATGAATTGGGAATGGGTGATGACATCTTTGACGCTCAACGTGATTTCACTGAAGCCGATTATGAAATGTTATTGGCCCTTGATGAGCGAAATCACCAGCATACTGGTGCTACTTCCAATCAGATCAATAATTTGCCGCAGTCCACCATCCAGACTGACACCGTCACAGAGACATGTGCCATTTGTCTTGAGACCCCAGTCAAGGGAGAAACTGTTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTTCGTAGGAAAACGTCATGCCCTGTGTGCAAGTCATCTGTCACTTAA 4146 0.4182 MAGINNISAYAHSPVHKAIILKDHAKLKEIVAVLPKLSSPYEIKTEAASIAEDEKASAISAVVNRRDVPNGDTPLHLAAKIGDPVAAEMLMDAGANSSLKNKEGWSALREAIINKQDKVAMVMIKYSWNDVNEKWHRRLPRYIATMRRMRDFYMEITFHFESSVIPFISRVAPSDTYKIWKRGGNMRADMTLAGFDGLKIKRSDQSLFFLGDGLDDEREIKLPGLLCQVSHKKKEVKVSHLYAEPTKPNDRQVKQRLERKCKEKTVRVGIDVSQAVLVPQMTWRRKEKKEIVGPWKSKVYEMQNVVLSVKSKRPPGAPPPTEAKLTQKEEIKKKEDEKIDDILTAEERKQFEAAWNSSEENDLHHKDNNVMKEKKVRSSRHNREKEHHHKGKSTTNAMSSASSSTSQKDENGESEYKRGMMPVLWLSPSFPLKIEELLPLLDIIAEKVKAVRRLRELLTTKLPKETFPVKVAIPVVSTVRVLVTFTKFEEMQQADQFESAPSSPTGGSQEDPEVEQSSSSSSSSSWFQWIKASSPQSSSSDAESSSKIDDRQDPFTIPSDYKWPGNSCGTIALLLLVKSNLFHPPSSIISKIKSMSRKRYTQYSTSTYTKVKSSSIKLKIESIERKRSDKFSSPLLPCLSSPSLSVSNLTTNQDMAEDMEIDHIVDIPDTPDRSNPGNDDRKYRGNPEKRERAFLVADEMTNNRNYIAVSPSDKPYPSQNASIFRKARSEKAFGLGMTHSNGAEKMEKGKTLRSNFPSKLSHRGHVSTEESGQFQQLKPTFPHWISRDKATEDKKELKSSIGNSSVPVKADSSNTSRNSFTGKCTLDNRTLPVPNISVDRGKSISLSNDSQSQLKTEKLVPLPPRSSTTPRGRGHKRLVRNGCISPHNIATKAKQSAEQSRLQTNYVEQNHAGDSVSRYTMSPTSIDDIVAEERGNGRRKGKEVLIHPSSHSDGLNAGNILTASSPLINSEVATGTSNSIRNSLEYSEEQGGWRTTHSEKNADQRLFDVNEHHSRRNYDIGGFINRKNMNRINRRDTGRSQNGNIVHDSLLDHTPGPTSRIIPEVDLSTPPADKRQRKRESTSGNPNEASRNSETVFLNSSGESSSSSWNRVSDPEVIELLSTPRHTIRPDDLDDNNNSLDARAKQVEADEILARELQEQLYHDDFVDGRGIDEHLAWELQNAEDHQDTSIDMHHISHPTWFPRANGQSRSRSHHNPSNRRRHVSQNHISSRMSQLRSRITNRSSTSRGRSPLFPIDMDLDMRLDILEALEDAVGDLNELGMGDDIFDAQRDFTEADYEMLLALDERNHQHTGATSNQINNLPQSTIQTDTVTETCAICLETPVKGETVRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSVT* 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0150 1381 MobiDBLite consensus disorder prediction 800 826 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 1070 1084 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 1197 1252 - -
Lja6g0150 1381 SMART ring_2 1336 1376 IPR001841 -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 1085 1111 - -
Lja6g0150 1381 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Lja6g0150 1381 CDD RING-H2_PA-TM-RING 1335 1377 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 1228 1251 - -
Lja6g0150 1381 SUPERFAMILY RING/U-box 1335 1380 - -
Lja6g0150 1381 ProSiteProfiles Zinc finger RING-type profile. 1336 1377 IPR001841 -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 394 409 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 353 380 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 664 689 - -
Lja6g0150 1381 Pfam GPCR-chaperone 187 562 IPR021832 -
Lja6g0150 1381 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Lja6g0150 1381 MobiDBLite consensus disorder prediction 493 522 - -
Lja6g0150 1381 SMART ANK_2a 70 99 IPR002110 GO:0005515
Lja6g0150 1381 SMART ANK_2a 103 133 IPR002110 GO:0005515
Lja6g0150 1381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1302 1381 IPR013083 -
Lja6g0150 1381 PANTHER UNCHARACTERIZED WITH ANKYRIN REPEAT DOMAIN 1 563 IPR021832 -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 353 415 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 310 338 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 534 553 - -
Lja6g0150 1381 Gene3D - 4 127 IPR036770 -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 840 879 - -
Lja6g0150 1381 Pfam Ring finger domain 1335 1377 IPR001841 -
Lja6g0150 1381 PANTHER GPCR-CHAPERONE PROTEIN 1 563 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 840 857 - -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 1031 1111 - -
Lja6g0150 1381 SUPERFAMILY Ankyrin repeat 63 127 IPR036770 -
Lja6g0150 1381 MobiDBLite consensus disorder prediction 790 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0150 Lja-Chr6 2516699 2537663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0150 657 955 C3H Transcription Factor Family AT1G04790 29.653 8.69e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0150 K21437 - aprc:113872307 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0150 6 2516699 2537663 Lja6g0150 6 2516699 2537663 ECH