Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0146 ATGGACTCTTCAATCCCCCTTAACGGCTGCAACTGCAACAAAGAAATGCAATATCCTTCTTCATGGACAAAAACACAGGATGAACAATTTGAAAACGCATTAGCTTTGTATGATGAAGATTCACCAGATCGCTGGAAAAACATAGCCAAAGCAGTTGATGGAAAATCAGAAGAGGAGGTGAAGATACACTACCAACTTCTTGTCGAAGATGTTAATAACATCGAGTGCGGACATGTTCCAATTCCTGACTATGACGACTCTGAATCCACAGACAATAGCAGTTGTATTGATGTGCTCAGTGACATCTCTGATGAGGGCTATGGAGATGTTGTATTGCCACTCTCTGATCATGGTTTTGACATACCAAAGGACATTGTGGGAAATTATAATCATTTTGCTCGGGTCGATGATGATAATGAAAGTGACTCCGCTGCTGGAAATGGAAAAGATATATGA 456 0.4057 MDSSIPLNGCNCNKEMQYPSSWTKTQDEQFENALALYDEDSPDRWKNIAKAVDGKSEEEVKIHYQLLVEDVNNIECGHVPIPDYDDSESTDNSSCIDVLSDISDEGYGDVVLPLSDHGFDIPKDIVGNYNHFARVDDDNESDSAAGNGKDI* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0146 151 CDD SANT 21 68 IPR001005 -
Lja6g0146 151 ProSiteProfiles SANT domain profile. 17 72 IPR017884 -
Lja6g0146 151 PANTHER PROTEIN RADIALIS-LIKE 3 16 87 - -
Lja6g0146 151 SMART sant 18 70 IPR001005 -
Lja6g0146 151 Pfam Myb-like DNA-binding domain 20 66 IPR001005 -
Lja6g0146 151 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Lja6g0146 151 Gene3D - 16 81 - -
Lja6g0146 151 ProSiteProfiles Myb-like domain profile. 14 68 IPR001005 -
Lja6g0146 151 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 16 87 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0146 Lja-Chr6 2457192 2459953 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g0146 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0146 - - jre:108991638 105.531