Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0139 ATGGGGAAGCAATTCCGGGAGAAGGAGTATGCAATGTGCAATGGAAACAATAGTCATCATACTCATCCAGGACGAGTTTGGGGAATTCTTCATATCATAAAGTACCATCATTGGCGTCATGTCAAGAGAAGGCTCACACAGAGGAGGCATGGTTGTGGAAGACCCTTTGCAAGAGATGAAATTTCATGTAGTTTTGATGACTCTGAGGTTGATAATATGCAGGAACATTATCATCCAAATACAAACTTGGCTGATGATGAAGAAAAGGTGGTACACTCCACTCCATCATCCAAATATTCCATCAAATCCAAAATAAAAGCACTTCTTCATGAGGATGTATACAAAAAGAAGGGTAGTCGACACAAGAGAAGCTCAACCTGTCCTACAAAGTCACAGCTAACCCGCATCAATTCCGTTCATCATTTGGAGGTTGATCCACTGAGTGAACTCTTATTAACTGTTGAAAGTCCTGAACCAGTTCTAGAAACCTTTCAGAACCATCTTGCTGCTGGCACATTGGATGTTTTGTCACCAGTTTTCTCAGGGAAACCTGTTAACAACAATGACAAATGTTTAGACTGTGGCACAATGTTTTCCAATGACATCTTGGAGCATAAACATCATAGGCAATTAACTGATGCAAACTTGAGTTCCCCTAGTGAAGGCGCGCCAGAAGAGAAGCTGATGAATGCAAAGATTTTCACAACTGATGCTTCACCCCACCTTTTCAAGGATTTTCTTGATGCTCTAGATGTTATCAACACAAACAAGGACTTTCTGTTAAAATATATTCAGGATCCAGGCTCTCCTTTGCCATTCCATAGTCATGATCAACAATCTTTCAGAAGTAAATCGAGACGTACGAAATCTATCTCGTTTCCTGTGTCTGGCTCATCATCAGGAACCAAAGATTCTGAGCCAGGACCTCTCATAAACCAAATGGTAGATGAGTGGTTCAATGCAAAAGAGGAGGGTCACATGCCAAATGTATCCATGTCTGAGTGTTCAGAAGATTTTCACCGACATTCAATGTCTTCAGGTTCTTCACATAAAGATGAACAATTCTTCTGTCCAGATGATAATTGGGTTGAAAGAGATCAAAGTTCTTCCTCAGTTTCATCCAACCAAGTGAGAACTAGGCATTTCAAGGATCTCAGACAGAAGATAAAGCATATAATTGAAGAGAGCAAAAATGAAAAGCACCGCATAACCATGGATGCTATACTCGATAAAATTCCTCGTGGAAATAGGTTCTCCAGAAATGTAAAGAATTTGATCCATGACAACCAATCCAAAGACCCCAATGGAGAAGGAAAAGACAGTGCCACGAATGGCTATAGTAATCGTCTCTCTTCGCGTTCCTTCAACAAGCGCCAACTATCGCCCACAAGGACTTCATCTTTGAGAGAATCAGCTAACAGATATTCTCAACTATATGAGACTTGTTTTAACAGTGAAGCCAAGTATCCTAAGACCGATAGCTTGAAATTGAGAACAGAAGAGAGAAGCTCATTGTTAAAGACCCCAAAATCCTTTAAAAGGTTTCTTTCATTGCCTAATCTGAAATCTTACTTCCACCAGAATGAGGAGCCTTCTGTTCCTTCATCTCCCCAAAGTTCAATTAAAAAAACTGGAGATAGAACCACAAGCACAAGTGTTAGTGATGACTCAAAGAGTCAAATTGTGCTACCTGTGCTTGCTGATAACACAATTCCAGAAAGCAGCTTGAAAGCTGACCAAAAGAACCTTCTTGTGAGGAGTGCTTCAAAATCAGGATTAGATATTAATAGTGAGGCAAAGGATGATAAGAGTACAGAAATTGATGGTTTAGAAAACAGTGAAGGTGCTGATTGCAATGAACTGGCAATTGGATCTGCAACTCCTATGCTGGTAGAAACAAACTCTGCCTTCTCTTCTGACACCAGCTTTCTGGATGTTACATTTGAGTTGGAGAACTTAAATGCATTGGAAGATGAGCAACAAGAGGAAAAACTGGATCACACTGAGGTGGTTGAGAATGGAGAGAATTTTCAGAAATTCGAAACTCTAAGCAAACGATTCGTCTATGAAATTCCATGTATTGAAGTGCATGCAAGTCATAAAGCGGCATTTAATTATGTGAGGAAGGTTTTAGAGCTCTCAGGGTTCACTAGCCATGAATCTCTTGGAATATGGTATGCTGATGACCAGCCAGTTGATCCTTCAGTATATGAAGAATTGGAAGGTTGCTTGCTTCTGGATCCTGATTGTTCTGGTAATTGTGATGAAGATGGACAGTGTAATCATCTGCTTCTCTTTGATGTAATCAATGAGGGATTGTTAGAGATTTTTGGGAGATCATACAGCTATTATCCAAGACCCTTGTCCTATCTCTCTCATGTTCATCCCTTGCCAGCAGGAGGTGATGTTCTTCATAAAGTATGGACACTCATTAGCTGGTATCTGAACTCAACTTCTGATGCTTACCAATCATTGGATTACTATGTGAGCAAAGATTTAGGAAGAAGTGATGGGTGGATGAACCTCCAATTTGATTCTGAATGTGTGGGGCTTGAGCTAGATGACTTGATTTTTGATGATCTTTTAGAGGAAATTATCTGCACTTAA 2607 0.4008 MGKQFREKEYAMCNGNNSHHTHPGRVWGILHIIKYHHWRHVKRRLTQRRHGCGRPFARDEISCSFDDSEVDNMQEHYHPNTNLADDEEKVVHSTPSSKYSIKSKIKALLHEDVYKKKGSRHKRSSTCPTKSQLTRINSVHHLEVDPLSELLLTVESPEPVLETFQNHLAAGTLDVLSPVFSGKPVNNNDKCLDCGTMFSNDILEHKHHRQLTDANLSSPSEGAPEEKLMNAKIFTTDASPHLFKDFLDALDVINTNKDFLLKYIQDPGSPLPFHSHDQQSFRSKSRRTKSISFPVSGSSSGTKDSEPGPLINQMVDEWFNAKEEGHMPNVSMSECSEDFHRHSMSSGSSHKDEQFFCPDDNWVERDQSSSSVSSNQVRTRHFKDLRQKIKHIIEESKNEKHRITMDAILDKIPRGNRFSRNVKNLIHDNQSKDPNGEGKDSATNGYSNRLSSRSFNKRQLSPTRTSSLRESANRYSQLYETCFNSEAKYPKTDSLKLRTEERSSLLKTPKSFKRFLSLPNLKSYFHQNEEPSVPSSPQSSIKKTGDRTTSTSVSDDSKSQIVLPVLADNTIPESSLKADQKNLLVRSASKSGLDINSEAKDDKSTEIDGLENSEGADCNELAIGSATPMLVETNSAFSSDTSFLDVTFELENLNALEDEQQEEKLDHTEVVENGENFQKFETLSKRFVYEIPCIEVHASHKAAFNYVRKVLELSGFTSHESLGIWYADDQPVDPSVYEELEGCLLLDPDCSGNCDEDGQCNHLLLFDVINEGLLEIFGRSYSYYPRPLSYLSHVHPLPAGGDVLHKVWTLISWYLNSTSDAYQSLDYYVSKDLGRSDGWMNLQFDSECVGLELDDLIFDDLLEEIICT* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0139 868 PANTHER TRM32-LIKE PROTEIN (DUF3741) 1 868 - -
Lja6g0139 868 MobiDBLite consensus disorder prediction 285 307 - -
Lja6g0139 868 MobiDBLite consensus disorder prediction 77 97 - -
Lja6g0139 868 MobiDBLite consensus disorder prediction 526 557 - -
Lja6g0139 868 Pfam Domain of unknown function (DUF4378) 704 864 IPR025486 -
Lja6g0139 868 PANTHER PROTEIN TRM32 1 868 IPR044257 -
Lja6g0139 868 MobiDBLite consensus disorder prediction 77 93 - -
Lja6g0139 868 MobiDBLite consensus disorder prediction 426 471 - -
Lja6g0139 868 Pfam Protein of unknown function (DUF3741) 226 269 IPR022212 -
Lja6g0139 868 MobiDBLite consensus disorder prediction 272 310 - -
Lja6g0139 868 MobiDBLite consensus disorder prediction 436 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0139 Lja-Chr6 2400276 2404098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0139 227 858 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 36.753 7.54e-101 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0139 - - gmx:100807303 1086.25