Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0138 ATGTCTTTGAACATCAGGGAGGGGAGAGGTTTGTCAGAAGGGTATTTCGTAATTTTACTGCTCTTGACTTTACTTTGTGGCATAGAGGGGTTGAACACAGAGGGGCATATCCTTCTAGAGCTGAAGAATGGACTTCATGACAAGTTTAATCTATTGGGGAGTTGGAAGTCTTCTGATGAAACCCCATGTGGATGGGTTGGTGTAAATTGTAGTGACAATAGCATCAACTCAGTGGTCATGTCTCTTAATTTGAGTTCTATAGGTCTTTCTGGAACTCTAAATGCTACTAGCATTGGGGGTTTGACCCATCTAACTTATGTAAATCTTGCTTTCAATGAGCTCACTGGAAATATCCCCAGGGAGATTGGTGAGTGCTTGAATTTGGAATCTCTATATTTGAACAACAATCAATTTGAGGGACCAATTCCTGCTGAATTAGGTAAGCTGTCTGTTTTGAGAAATTTGAACATTTGCAACAATAAACTCTCTGGTGTTCTTCCGGGCGAGTTTGGAAGCATGTCTTCATTGGTTGAGTTAGTGGCCTATAGCAACTTTCTTGTTGGCCCCCTGCCTAACTCCATCGGAAATTTGAACAATCTTGTGACTTTCAGAGCCGGGGCAAATAACATTACCGGTAGCTTGCCGAAGGAAATTGGCAGATGTAAGAGCTTGGAACGTCTTGGTCTTGCTCAAAATCAGCTCACAGGGGAGCTACCGAGTGAGATTGGCATGCTTAACAGCTTAAAAGAACTCGTTTTATGGGAAAACCGGTTCTCCGGAGCTATTCCTAAAGAGCTAGGGAATTGCAGTAATCTTGAGACCCTTGCTTTATATGGGAATAATCTTGTTGGGCCTTTACCTAGGGAGATTGGGAACCTCAAATCACTGAAGTCGTTGTATCTTTACAGAAATAAGTTAAATGGGACCATCCCAAGGGAAATTGGAAATCTTTCTTCAGTTTTAAGCATTGATTTCTCAGAGAATTCTTTTGTAGGTGACATCCCTTCGGAGTTGAGCAAAATAAGTGGTCTGAGTTTGCTCTTTCTCTTTGAGAATCATCTAACTGGTGTTATACCTGACGAGTTTAGCAACTTGAGGAACCTGTCTCAGCTGGACCTATCAATAAACAATCTTAGAGGTCCAATTCCACTTGGCTTCCAATATCTGTCTCGAATGTATCAGTTGCAACTTTTTGACAACTCTCTAAGTGGTGTTATTCCTCAGGGACTCGGACTTCGTAGTCCTCTTTGGGTGGTTGATTTCTCCGACAACAACTTGACCGGAAGAATACCTCCTCATCTTTGCCGAAATTCCCGCTTGATGTTGTTGAATTTGGCAGCTAACCAGCTTAATAGAAATATACCCACAGGGATACTGAACTGTGAATCACTGACACAGCTGCTGTTGTTTGGAAACAAGCTTACCGGCGGCTTCCCTTCAAAACTGTGTAAACTGGAGAACCTTACTGCCGTTGATTTGAACGAGAACAGGTTCAGCGGTCCACTTCCTCCTGAGATTGCGTACTGCCGTAAATTGCAAAGGCTTCATATTGCAAACAATTATTTCGTATCAGAGTTACCTAAGGAAATAGGAAACCTCTCTCAGTTGGTGACTTTTAATGTTTCATCAAATCTTTTCACTGGTGGAATCCCACCTGAAATTTTTTGGTGCCAAAGGCTCCAGCGGCTTGATCTCAGTCACAATAGCTTTACTGGTTCCTTGCCAAGTGAGCTTGGAACACTTCAACACTTGGAGATTCTCAAGCTCTCAAATAATAAGCTGTCTGGATATATTCCTGGAGCATTAGGTAATCTGTCTCATTTGAACTGGTTGCTGATGGATGGAAATTCATTTTCTGGTGAAATACCTTCCCACTTGGGTTATCTTTCAAGCTTACAGATTGCAATGGATCTCAGTTACAATAATCTTTCTGGACGAATACCGTCTCAGCTCGGGAATCTCAACATGCTTGAATATCTGTTTCTGAATAACAACCATTTGGATGGTGACATTCCCAGCTCCTTCAGTGAGCTTTCAAGCTTGCTAGGATGTAATTTCTCACACAATAACCTCTCTGGACCTATACCTTCCACTAAGATTTTCCAAGATATGGATGCAAGTAGCTTTATTGGTGGTAACAAAGGCCTTTGCGGTGCACCTCTCGGTAGCTGCAACACCAATCGAGCTTCTCGTTCTGTTCGTCCAGGGAAAAATGTTGAGTCTCCTCGCGCTAAAATTGTCATGATCATTGCAGCTGTTGTTGGTGGTGTTTCTCTCATTTTTATTGTAGTTATTTTGTATTATATGAGACGTCCTAGGGAGACAATTGATTCCTTTGGAGACGCTGAGAGTGAGACTCCCTCCGCGAATTCAGATATGTATTTGCCTCCAAAGGATGGTTTCACATTTCAAGATCTAGTTGAAGCTACAAAAAGGTTTCATGAAAGCTATGTTATTGGCCGCGGAGCTTGTGGAACAGTTTACAAGGCAGTGATGAAATCTGGTAAAACTATTGCTGTAAAGAAGTTAGCATCTAACAGGGAGGGGAATAACATTGAGAACAGTTTCAGGGCTGAGATAATGACTCTGGGAAGGATAAGGCATCGGAATATAGTGAAGTTGTATGGTTTTTGCTATCACCAGGGCTCCAATCTCCTACTTTATGAGTACATGGAAAGGGGTAGCTTAGGAGAACTATTGCATGGTTCTGCAGCTAGTTTGGAGTGGCCGACTCGGTTCATGATTGCGCTTGGAGCTGCTGAGGGTCTTGCCTACTTGCATCATGACTGCAAACCAAAGATTGTTCACCGTGACATAAAATCTAATAACATTCTACTTGATGAAAGTTTTGAGGCCCATGTTGGTGATTTTGGCTTGGCAAAAGTGATTGACATGCCACAGTCAAAATCAATGTCTGCAATTGCTGGATCTTATGGGTATATTGCTCCTGAGTATGCATATACCATGAAGGTCACAGAAAAGTGTGACATATACAGTTACGGCGTTGTGCTCTTGGAACTGCTAACCGGAAAATCTCCAGTTCAGCCACTGGAGCAAGGAGGTGATCTTGTCACATGGGTGAGGAACCATATTCGGGACCATGACAATACATTGTCATCAGAGATACTCGACAGTCGTCTTGAACTTGAAGAACAAATCACCAGGAATCACATGCTCACTGTTTTGAAACTTGCTTTACTATGCACAAGCATGTCTCCTTCAAAGAGGCCAACAATGCGCGAAGTTGTGTCAATGCTCATTCTGTCCAATGAGCGAGAAGGAAACCTAACACTCACTCAAACATATAACCATGATCTTCCTTCAAAAGGTGTCATATGA 3339 0.4235 MSLNIREGRGLSEGYFVILLLLTLLCGIEGLNTEGHILLELKNGLHDKFNLLGSWKSSDETPCGWVGVNCSDNSINSVVMSLNLSSIGLSGTLNATSIGGLTHLTYVNLAFNELTGNIPREIGECLNLESLYLNNNQFEGPIPAELGKLSVLRNLNICNNKLSGVLPGEFGSMSSLVELVAYSNFLVGPLPNSIGNLNNLVTFRAGANNITGSLPKEIGRCKSLERLGLAQNQLTGELPSEIGMLNSLKELVLWENRFSGAIPKELGNCSNLETLALYGNNLVGPLPREIGNLKSLKSLYLYRNKLNGTIPREIGNLSSVLSIDFSENSFVGDIPSELSKISGLSLLFLFENHLTGVIPDEFSNLRNLSQLDLSINNLRGPIPLGFQYLSRMYQLQLFDNSLSGVIPQGLGLRSPLWVVDFSDNNLTGRIPPHLCRNSRLMLLNLAANQLNRNIPTGILNCESLTQLLLFGNKLTGGFPSKLCKLENLTAVDLNENRFSGPLPPEIAYCRKLQRLHIANNYFVSELPKEIGNLSQLVTFNVSSNLFTGGIPPEIFWCQRLQRLDLSHNSFTGSLPSELGTLQHLEILKLSNNKLSGYIPGALGNLSHLNWLLMDGNSFSGEIPSHLGYLSSLQIAMDLSYNNLSGRIPSQLGNLNMLEYLFLNNNHLDGDIPSSFSELSSLLGCNFSHNNLSGPIPSTKIFQDMDASSFIGGNKGLCGAPLGSCNTNRASRSVRPGKNVESPRAKIVMIIAAVVGGVSLIFIVVILYYMRRPRETIDSFGDAESETPSANSDMYLPPKDGFTFQDLVEATKRFHESYVIGRGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEIMTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSAASLEWPTRFMIALGAAEGLAYLHHDCKPKIVHRDIKSNNILLDESFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKSPVQPLEQGGDLVTWVRNHIRDHDNTLSSEILDSRLELEEQITRNHMLTVLKLALLCTSMSPSKRPTMREVVSMLILSNEREGNLTLTQTYNHDLPSKGVI* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0138 1112 SMART serkin_6 813 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0138 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Lja6g0138 1112 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Lja6g0138 1112 SMART LRR_typ_2 581 604 IPR003591 -
Lja6g0138 1112 SMART LRR_typ_2 245 269 IPR003591 -
Lja6g0138 1112 SMART LRR_typ_2 293 317 IPR003591 -
Lja6g0138 1112 SMART LRR_typ_2 101 125 IPR003591 -
Lja6g0138 1112 SMART LRR_typ_2 149 172 IPR003591 -
Lja6g0138 1112 SMART LRR_typ_2 365 388 IPR003591 -
Lja6g0138 1112 SMART LRR_typ_2 533 557 IPR003591 -
Lja6g0138 1112 SMART LRR_typ_2 654 678 IPR003591 -
Lja6g0138 1112 SMART LRR_typ_2 485 509 IPR003591 -
Lja6g0138 1112 Pfam Leucine rich repeat 247 306 IPR001611 GO:0005515
Lja6g0138 1112 Pfam Leucine rich repeat 559 617 IPR001611 GO:0005515
Lja6g0138 1112 SUPERFAMILY Protein kinase-like (PK-like) 790 1088 IPR011009 -
Lja6g0138 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 7 1097 - -
Lja6g0138 1112 Gene3D Ribonuclease Inhibitor 288 412 IPR032675 -
Lja6g0138 1112 Gene3D Ribonuclease Inhibitor 185 287 IPR032675 -
Lja6g0138 1112 Gene3D Ribonuclease Inhibitor 413 728 IPR032675 -
Lja6g0138 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 1097 - -
Lja6g0138 1112 SUPERFAMILY RNI-like 322 699 - -
Lja6g0138 1112 ProSiteProfiles Protein kinase domain profile. 813 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0138 1112 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Lja6g0138 1112 Gene3D Phosphorylase Kinase; domain 1 778 890 - -
Lja6g0138 1112 Gene3D Transferase(Phosphotransferase) domain 1 891 1104 - -
Lja6g0138 1112 Pfam Protein kinase domain 814 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0138 1112 SUPERFAMILY RNI-like 81 403 - -
Lja6g0138 1112 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0138 Lja-Chr6 2382865 2388592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0138 31 1086 Receptor kinase-like Gene Family AT5G56040 37.453 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja6g0138 Pkinase 5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0138 - - gmx:100805792 1775.76