Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0136 ATGGTAATGGGGGCTCTTGGTTCTGTGGATGACCTCTTGAATTTCTCATCAGACATTGGTGAGGAAGATGATGATGACGAGAAACCTAACAAAGCCTTTCCTTCACTTAACCCAATATGCAGTGATCCACCATCATTTAACCCATCGGACCTGAACGGTCGTAGTCATTCAGTTCCTGCATATGCAGAAGAGGAGCTCGAATGGTTATCTAACAAAGATGCATTTCCTGCCATTGAAACATTTGTCGAGTTATCTTCTATTCATCCAGATCTAGCAAAGCACCAAAAGGCTGCCCCAAAGATTGACTATAGCACAAGCAGTAGCAACAGTAATAACAGCAGTAACAGCATTACCCTCTTAAGTGGCTACGATCACCTGAAAGTCCCTGTCCGTGCACGGAGCAGGCGTCGCAGTAGGCGTCGCCCTATCATTGCTGACAACTCTGGCCAGCAATTCTGGTGGCAACAACTGAGCAATGAAATTTGCAAAGAAGAAGCGATAAAAATCTCAACCATTGGGAGGAAATGTCTTCACTGTGGAGCTGAAAAAACTCCACAATGGCGTGCAGGTCCCCATGGTCCAAAAACACTTTGTAATGCATGTGGTGTTAGATTTAAGTCTGGCAGACTTGTGCCTGAATACCGTCCGGCAAGTAGCCCAACTTTTCGCACTGAATTACATTCCAATTCCCACAGGAAGGTAATGGAGATGAGGAAGCAAAAGCATATGGGAATGGGTTGA 741 0.4534 MVMGALGSVDDLLNFSSDIGEEDDDDEKPNKAFPSLNPICSDPPSFNPSDLNGRSHSVPAYAEEELEWLSNKDAFPAIETFVELSSIHPDLAKHQKAAPKIDYSTSSSNSNNSSNSITLLSGYDHLKVPVRARSRRRSRRRPIIADNSGQQFWWQQLSNEICKEEAIKISTIGRKCLHCGAEKTPQWRAGPHGPKTLCNACGVRFKSGRLVPEYRPASSPTFRTELHSNSHRKVMEMRKQKHMGMG* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0136 246 ProSiteProfiles GATA-type zinc finger domain profile. 170 206 IPR000679 GO:0006355|GO:0043565
Lja6g0136 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 234 - -
Lja6g0136 246 Gene3D - 170 223 IPR013088 GO:0006355|GO:0008270
Lja6g0136 246 MobiDBLite consensus disorder prediction 15 55 - -
Lja6g0136 246 CDD ZnF_GATA 175 223 IPR000679 GO:0006355|GO:0043565
Lja6g0136 246 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Lja6g0136 246 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Lja6g0136 246 PANTHER GATA TRANSCRIPTION FACTOR 1 9 241 - -
Lja6g0136 246 MobiDBLite consensus disorder prediction 40 54 - -
Lja6g0136 246 PANTHER GATA TRANSCRIPTION FACTOR 9 241 - -
Lja6g0136 246 SMART GATA_3 170 220 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0136 Lja-Chr6 2354605 2358689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0136 46 246 C2C2-Gata Transcription Factor Family AT3G24050 42.424 2.94e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja6g0136 GATA 2.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0136 - - gmx:100784527 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0136 6 2354605 2358689 Lja6g0136 6 2354605 2358689 ECH