Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0133 ATGGATATAATGAGGGTGCCAAAGAGAAGATTGAGTGAGAGAACTCAACAACCACTGGCTCAGATATGCAAATTCTGGCTTCAGGGGAGATGCAACAGAAACCCTTGCACTTTCTGGCATGGACAAACACCGCCGCCGCCGCCACAATCTACTGGTTATCATCATACAAAGACGAACGCCCCTTACTGTAACTCCAAGGAAGTCTTGATTAGTAAGACCACAGCTGGATCCCGTATTGCCAAACCTCTAAGTAGATGCAATGCTAGGACTCCCCCTGAGAACACCCTCAAGCATAACTCCAAGTCCGTGTTGATTACAAAAACTGGAGAAGGGACATGTATTCCTCAAGCTTCTCAGAAGCCGTCACTCAGTATATGCAAATATTGGGTCACTGGCAATTGCACATATGGTGATCAGTGCCGGCATTTACATTCGTGGCACAATGGTGATGGGATATCTACATTAGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGGATTGCATTTCCAGCTGGATCAGACAAACTTTATTCTGGCAGCACAGATGGGACAGTTCGGATATGGGACTGCAATACTGGTCAATGTGCTAATGTAACAAACCTTGGAGCTGAAGTTACCTCTTTAATCTGTGAGGGCCCATGGATTTTTGTTGGCCTGCTGAATGCGGTCAAGGCTTGGCATATTCCTACTGCTTCAGAGTTTACTCTTGTTGGACCTAAGGGGAGAGTCCTTGCCATGATTGTTGGCAATGACACACTTTTTGCTGCAGCAGAGGATGGTGTAATCTCTGCATGGAAAGGAAGCTCTGATGCCAACTCCCCTTTTCAACTGGTTGCGTCACTAAGTGGCCACACTAAAGCTGTATCTTGCCTGACTGTTGGTCTCAATAGGCTTTACTCAGGGTCGATGGACCAAAGCATAAAGGTTTGGGACCCTGATACTTTAGAGTGTTTAATGACACTCAATGGTCATACTGGGGAAGTTACATCACTTATATGTTGGAGCGATTTTCTGTTATCTGGCGCATCTGACTGCACTATTAAGATCTGGGTTGCCACAGAAGAGGGACCTTTGAAGGTGACATATACGCACACTCTAGAAAATGGTGTTGTTGCACTTAATGGGATGACTGATGCAGAAGGCAAGCATGTATTGTGTTGCTCGTCCAGAGACAATTCTGTTCGCTTGTATGAATTGCCATCATTTTCAGAGAGGGGTCGTTTATTTTCAAGAAAGGAAATTCGATCAATTGAGGTTGGTCCTGGTGGGCTCTTCTTCACTGGTGATGATACTGGTTTAGTGAAAGTGTGGAAATGGTTGGAAGAGACCAAGGTGGCAGCATGTTCTTGA 1353 0.4538 MDIMRVPKRRLSERTQQPLAQICKFWLQGRCNRNPCTFWHGQTPPPPPQSTGYHHTKTNAPYCNSKEVLISKTTAGSRIAKPLSRCNARTPPENTLKHNSKSVLITKTGEGTCIPQASQKPSLSICKYWVTGNCTYGDQCRHLHSWHNGDGISTLAKLHEHKKVVTGIAFPAGSDKLYSGSTDGTVRIWDCNTGQCANVTNLGAEVTSLICEGPWIFVGLLNAVKAWHIPTASEFTLVGPKGRVLAMIVGNDTLFAAAEDGVISAWKGSSDANSPFQLVASLSGHTKAVSCLTVGLNRLYSGSMDQSIKVWDPDTLECLMTLNGHTGEVTSLICWSDFLLSGASDCTIKIWVATEEGPLKVTYTHTLENGVVALNGMTDAEGKHVLCCSSRDNSVRLYELPSFSERGRLFSRKEIRSIEVGPGGLFFTGDDTGLVKVWKWLEETKVAACS* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0133 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 199 IPR001680 GO:0005515
Lja6g0133 450 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 448 - -
Lja6g0133 450 Gene3D - 126 273 IPR015943 GO:0005515
Lja6g0133 450 SMART WD40_4 356 399 IPR001680 GO:0005515
Lja6g0133 450 SMART WD40_4 402 439 IPR001680 GO:0005515
Lja6g0133 450 SMART WD40_4 230 267 IPR001680 GO:0005515
Lja6g0133 450 SMART WD40_4 275 312 IPR001680 GO:0005515
Lja6g0133 450 SMART WD40_4 151 190 IPR001680 GO:0005515
Lja6g0133 450 SMART WD40_4 315 352 IPR001680 GO:0005515
Lja6g0133 450 Pfam Zinc finger domain 126 144 - -
Lja6g0133 450 ProSiteProfiles Zinc finger C3H1-type profile. 17 43 IPR000571 GO:0046872
Lja6g0133 450 SMART c3hfinal6 17 42 IPR000571 GO:0046872
Lja6g0133 450 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Lja6g0133 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 321 IPR001680 GO:0005515
Lja6g0133 450 PRINTS G protein beta WD-40 repeat signature 299 313 IPR020472 -
Lja6g0133 450 PRINTS G protein beta WD-40 repeat signature 177 191 IPR020472 -
Lja6g0133 450 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Lja6g0133 450 Gene3D - 274 450 IPR015943 GO:0005515
Lja6g0133 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 312 - -
Lja6g0133 450 Pfam WD domain, G-beta repeat 155 190 IPR001680 GO:0005515
Lja6g0133 450 Pfam WD domain, G-beta repeat 317 351 IPR001680 GO:0005515
Lja6g0133 450 Pfam WD domain, G-beta repeat 277 312 IPR001680 GO:0005515
Lja6g0133 450 Pfam RNA-binding, Nab2-type zinc finger 22 41 - -
Lja6g0133 450 ProSiteProfiles Zinc finger C3H1-type profile. 120 147 IPR000571 GO:0046872
Lja6g0133 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 351 IPR001680 GO:0005515
Lja6g0133 450 SUPERFAMILY CCCH zinc finger 122 145 IPR036855 GO:0046872
Lja6g0133 450 PANTHER - 9 448 IPR044715 -
Lja6g0133 450 SUPERFAMILY WD40 repeat-like 139 439 IPR036322 GO:0005515
Lja6g0133 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0133 Lja-Chr6 2290502 2293279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0133 299 447 U-box Gene Family AT1G04510 26.282 6.45e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja6g0133 WD40 7.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0133 - - gmx:100787799 547.74