Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0127 ATGGGGAAAGGACGAAGTCCTGGGAAATGGTTCAAGAACTTACTTTTGGGGAAGAAGAAATCATCATCAAAGTCTAATTCATCAAAGAATGATGATATTTTTAAACCTTCAAGTAACAAGGATGTGCTGGGGTCTTCTGAGGTGTCTGTGTCGGCTCAAACTGTGGATTCTTTGATCATATCCGCACCTCTATCTGGAACTAATGCTACTCAAGGAGTGGTTTCAGAAAAGGAAATAGTTAGCAGGCCATCGAATGACAGGGATGTTCTTTCAAATGGAGATAAAGAGGCTCATGCTCAGCCTATTGCTAATGTGGAAACTATCGAGAAACTCCAGCTTACAGAAGCAGCTATAAAACTTCAGGCTGCCTGCAGAGGCTATCAGGCTCGTCGAGCATTTCAAACACTCAGAGCTATCACACAACTGCAAGCTCTTATCCGTGGCCACCTGGTTAGAAGGCAAGCTGTTTCTGCATTATATTGTGTGAAAGGAATTGTTAAATTTCAAGCATTGGCTCGCGGTTACAATGTTAGGCGTTCTGATGTTGGGCTTGCAGTCCTGAAAATTCGAAAGGTAAAAGTAATTAGATTAATTCAGCAAGTACAATGA 609 0.4187 MGKGRSPGKWFKNLLLGKKKSSSKSNSSKNDDIFKPSSNKDVLGSSEVSVSAQTVDSLIISAPLSGTNATQGVVSEKEIVSRPSNDRDVLSNGDKEAHAQPIANVETIEKLQLTEAAIKLQAACRGYQARRAFQTLRAITQLQALIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSDVGLAVLKIRKVKVIRLIQQVQ* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0127 202 PANTHER IQ-DOMAIN 5-RELATED 1 190 - -
Lja6g0127 202 SMART iq_5 135 156 IPR000048 GO:0005515
Lja6g0127 202 SMART iq_5 112 134 IPR000048 GO:0005515
Lja6g0127 202 SMART iq_5 160 182 IPR000048 GO:0005515
Lja6g0127 202 MobiDBLite consensus disorder prediction 18 45 - -
Lja6g0127 202 Pfam IQ calmodulin-binding motif 163 179 IPR000048 GO:0005515
Lja6g0127 202 Pfam IQ calmodulin-binding motif 114 134 IPR000048 GO:0005515
Lja6g0127 202 Pfam IQ calmodulin-binding motif 137 154 IPR000048 GO:0005515
Lja6g0127 202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 155 IPR027417 -
Lja6g0127 202 Gene3D - 110 159 - -
Lja6g0127 202 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Lja6g0127 202 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 190 - -
Lja6g0127 202 MobiDBLite consensus disorder prediction 1 45 - -
Lja6g0127 202 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0127 Lja-Chr6 2210469 2214218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0127 4 188 IQD Protein Family AT1G14380 42.328 2.51e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0127 - - lja:Lj1g3v1638640.1 337.806