Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0100 ATGTATTGGGGTGGAGTTATGACTGGTCACATGGGTAGGGGTTTCACAGAAGAATTATGGAGGAAGGGACCATGGACTGCTGAAGAGGACAGGTTGCTAATTGAGTATGTTAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGGAAGAGTTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGTTGCATGCTAGATGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGGAGAACTGACAATGAGATAAAGAATTACTGGAGGACCCATTTCAAGAAAAAGGCAAAAAGTCCCTCTGATGCTGCTGAAAAGGCAAGAAACAGACTCCTAAGGAAGCAGCAATTTCACCAGCAACAACAACAACAACAACAACAGTTGCTTCAGCAGCAGCAGATGCAACAGCAGCAACAACAGCAACAGCAAATGCAATTCAACTTGGACCTGAAAGGGATCATGGCCTTGCTTGAGGAAAACAACAGCCAAAGAGTCCCTTATATATCTCAGGCAATTAGACAAGATATGGTGAACATGTGTCCAAACACCACAGAAGAGCAAGGATACTTGTACTCCTCTGCAGTACCAGAGGCCTCAGCAGAAGAAATTTTATGGGATGGGCTGTGGAACATGGATGAAGCTCATGGCAATCTCAGTGTAGCAAACAAAGCTGGTCTATACAATTTAGTTGCTCCCTTCTGTTGA 786 0.4478 MYWGGVMTGHMGRGFTEELWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRLLRKQQFHQQQQQQQQQLLQQQQMQQQQQQQQQMQFNLDLKGIMALLEENNSQRVPYISQAIRQDMVNMCPNTTEEQGYLYSSAVPEASAEEILWDGLWNMDEAHGNLSVANKAGLYNLVAPFC* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0100 261 Gene3D - 22 74 - -
Lja6g0100 261 Gene3D - 79 123 - -
Lja6g0100 261 SUPERFAMILY Homeodomain-like 21 116 IPR009057 -
Lja6g0100 261 CDD SANT 24 69 IPR001005 -
Lja6g0100 261 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Lja6g0100 261 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Lja6g0100 261 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Lja6g0100 261 ProSiteProfiles Myb-like domain profile. 21 69 IPR001005 -
Lja6g0100 261 CDD SANT 79 120 IPR001005 -
Lja6g0100 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 69 IPR017930 -
Lja6g0100 261 PANTHER MYB TRANSCRIPTION FACTOR 4 248 - -
Lja6g0100 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 248 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja6g0100 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Lja6g0100 261 Coils Coil 149 169 - -
Lja6g0100 261 SMART sant 21 71 IPR001005 -
Lja6g0100 261 SMART sant 74 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0100 Lja-Chr6 1728270 1729919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0100 15 261 MYB Transcription Factor Family AT4G13480 54.779 3.89e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g0100 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0100 K09422 - gmx:100795981 399.438