Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0096 ATGGCTGCCACTGCTGCAGCTGCAGGCATAGCCTCTTCCTTGTTTTCTTCTTCCATCAACACCAATGTCAAATGTCTACGCTCCAAGAACTGCTCCGTGTTGGCATCAGTGTCACAGTCCTACCTAGTGGAACCTTTGTCCATTGGTGGCACCATCTCACACAACAAGTTGTGGGTTCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTGGCACTGGCTGCTGAGGCAGATGATGGTTTAGTTGAAGAGAAAGTTGAGGAAGTGGTAGCAGAGGAAGAGGCTAATTCTTCTGTCAACACTAAGCTTTATTTTGGGAATTTGCCATACAGTGTTGATAGTGCACAACTTGCAGGGTTGATTGAGGAATATGGTAGTGCTGAACTAATTGAGGTTCTTTACGACAGGGACTCTGGAAAAAGTAGAGGCTTTGCATTTGTGACGATGAGTTGTGTTGAAGATTGTAATACTGTCATCGAAAATCTTGATGGAAAAGAGTTCTTGGGCCGAACTTTGCGGGTGAACTTATCTGACAAACCAAAACCAAAAGAACCCTTGTACCCCGAAACTGAGCATAAGCTTTTTGTTGGGAACCTGTCATGGACAGTAACTTCTGAGAGTCTAATACAAGTCTTTCAAGAATATGGAACCGTGGTCGGAGCCAGGGTCTTATATGATGGGGAAACCGGAAGGTCACGTGGCTATGGATTCGTTTGCTATTCAAAAAGATCTGAATTGGAAACTGCCCTTATATCCCTAAATAATGTGGAACTAGAAGGACGAGCAATACGAGTAAGCTTGGCGGAAGGAAAACGTTCATAA 822 0.4428 MAATAAAAGIASSLFSSSINTNVKCLRSKNCSVLASVSQSYLVEPLSIGGTISHNKLWVPRISAAVAQEEVALAAEADDGLVEEKVEEVVAEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0096 273 SUPERFAMILY RNA-binding domain, RBD 100 183 IPR035979 GO:0003676
Lja6g0096 273 PANTHER TRANSFORMER-2-RELATED 137 177 - -
Lja6g0096 273 PANTHER TRANSFORMER-2-RELATED 184 273 - -
Lja6g0096 273 PANTHER TRANSFORMER-2-RELATED 74 140 - -
Lja6g0096 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Lja6g0096 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 264 IPR000504 GO:0003723
Lja6g0096 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Lja6g0096 273 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lja6g0096 273 SMART rrm1_1 193 266 IPR000504 GO:0003723
Lja6g0096 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Lja6g0096 273 Gene3D - 62 181 IPR012677 -
Lja6g0096 273 Gene3D - 182 273 IPR012677 -
Lja6g0096 273 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 74 140 - -
Lja6g0096 273 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 137 177 - -
Lja6g0096 273 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 184 273 - -
Lja6g0096 273 SUPERFAMILY RNA-binding domain, RBD 185 272 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0096 Lja-Chr6 1673165 1675930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0096 95 271 Eukaryotic Initiation Factors Gene Family AT3G16380 32.804 9.86e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0096 - - aprc:113871254 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0096 6 1673165 1675930 Lja6g0096 6 1673165 1675930 ECH