Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0091 ATGGCAACCCAAATGAGCAAGAAGCGAAAGTTTGTGGCGGATGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTCACCAGAGAGCTTGCTGAGGATGGTTACTCCGGTGTGGAGGTCAGGGTTACCCCTGTCCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTTGGTGAGAAGGGAAGGAGAATTAGGGAGCTTACCTCAATTGTACAGAAGAGGTTCAAGTTTCCTGAGAATAATGTGGAACTCTATGCTGAGAAGGTGAATAACAGAGGGCTCTGTGCTATTGCTCAGGCTGAGTCTCTCCGCTACAAGCTCCTTGGTGGCCTTGCTGTACGCAGGGCTTGCTATGGTGTTCTGAGATTTGTTATGGAAAGTGGTGCTAAGGGATGTGAGGTAATTGTCAGTGGAAAATTGAGAGCCCAGAGGGCCAAATCCATGAAGTTCAAGGATGGGTACATGATTTCTTCTGGCCAACCAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATCAAGGTTAAGATCATGCTCGATTGGGATCCTAAAGGTAAACAGGGTCCCAAAACCCCCCTCCCGGATATTGTCACAATCCACACTCCAAAGGAGGAAGAAGAATACAGGCCTGTGGCTGTTTTGGCAAATGATATTGAGGTTCCTGTTGCTTGA 705 0.4865 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQAVLGEKGRRIRELTSIVQKRFKFPENNVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYRPVAVLANDIEVPVA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0091 234 CDD 40S_S3_KH 15 95 - -
Lja6g0091 234 PANTHER RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED 2 232 - -
Lja6g0091 234 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Lja6g0091 234 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lja6g0091 234 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Lja6g0091 234 Gene3D - 1 91 IPR015946 -
Lja6g0091 234 Gene3D - 93 219 IPR036419 -
Lja6g0091 234 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 2 232 - -
Lja6g0091 234 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Lja6g0091 234 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Lja6g0091 234 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Lja6g0091 234 SMART kh_6 42 111 IPR004087 GO:0003676
Lja6g0091 234 Pfam KH domain 20 93 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0091 Lja-Chr6 1642766 1646010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0091 1 234 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.383 9.15e-150 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0091 K02985 - gmx:100795581 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0613 1 5644865 5649581 Lja6g0091 6 1642766 1646010 PCT