Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0088 ATGAATTGCTCCATCTCCGGTGAGATTCCGGAAGAGCCCGTCGTGTCCAGGAACTCTGGTCTTCTCTTCGAGAAGCGTTTGATCGAGAGACACATATCGGATTATGGGAAATGTCCAATTACTGGAGAACCACTTACTCTGGATGACATTGTACCAATCAAAACTGGCAAGATAGTGAAGCCCAGACCTGTGCAAGCAGCTAGCATCCCTGGCATGCTTGGAATGTTTCAAAATGAATGGGATGGGTTGATGCTATCAAATTTTGCATTGGAGCAACAATTGCACACCGCAAGGCAAGAGCTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGCGTGATTGCAAGACTTAAAAAGGAAAGAGATGAAGCTAGGTCTCTACTTGCACAGGCAGAAAGGCAGTTCCCTATTTCTACACCAAATGCCATAACAGCCCCTGTCCTAAGCAATGGGAAAAGAGCTGCTGAGGATGAGGAGCTGGCACCTAGTGCGAAGAGAATACATCCTGGAATATCTAAAATCATAATTGATGAGCTAACAGACTGCAACGCTGCTCTTTCACAGCAGAGGAAAAAGCGCCAGATTCCTGCAACTTTGGCTCCTGTTGACGCTCTGGAGACATACACCCAAATATCTAGTCATCCCTTTCACAAAACTAACAAACAAGGCATTATATGTCTTGATATCCTTTATTCTAAGGACCTAATTGCAACTGGAGGTGTTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAAATACTAGCTACACTCAGCGGTCACTCCAAAAAGGTAACCAGTGTGAAGTTTGTAGCTCAGGGCGATTCACTCTTAACTAGTTCAGCAGATAAGACAGTACGTTTGTGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCATATATTGAGGGATCATACAGCTGAGGTGCAAGCTGTCACCGTCCATGCCACCAATAATTACTTTGTGACTGCTTCGCTTGATGGCACTTGGTGCTTTTATGAACTGTCGTCAGGGACATGTCTCACTCAGGTTTCGGACCCTTCTGGTTCTTCTGCAGGCTATACAGCTGCAGCTTTTCATCCTGATGGTCTCATTCTTGGAACTGGCACAACTGATTCTATTGTTAAGATCTGGGATGTGAAAAGTCAGGCAAATGTTGCTAAGTTTGATGGACATGTAGGGCATGTGAATGCCATATCTTTTTCCGAGAATGGATACTACCTTGCGACTGCAGCTCATGATGGTGTGAAGCTTTGGGATCTACGTAAATTGAAGAACTTCCGTAATTTCGCTCCATATGACTCAGAAACTCCGACGAACTCCGTGGAGTTCGACCACAGTGGATCCTACATTGCAATTGCAGGCTCTGATGTAAGAATTCACCAAGTTGCAAATGTGAAATCTGAATGGAACATTATCAAAACTTTTCCTGATTTATCTGGAACAGGGAAGGCAACGTGTGTCAAATTTGGTCCTGATTCAAAATATGTGGCGGTTGGATCAATGGACCGAAATCTTAGAATATTTGGCTTGCCTGGTGAAGATGATGTTCCTGCTGAGTCATAA 1575 0.4425 MNCSISGEIPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPISTPNAITAPVLSNGKRAAEDEELAPSAKRIHPGISKIIIDELTDCNAALSQQRKKRQIPATLAPVDALETYTQISSHPFHKTNKQGIICLDILYSKDLIATGGVDTNAVIFDRPSGQILATLSGHSKKVTSVKFVAQGDSLLTSSADKTVRLWQGSDDGNYNCRHILRDHTAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDPSGSSAGYTAAAFHPDGLILGTGTTDSIVKIWDVKSQANVAKFDGHVGHVNAISFSENGYYLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYIAIAGSDVRIHQVANVKSEWNIIKTFPDLSGTGKATCVKFGPDSKYVAVGSMDRNLRIFGLPGEDDVPAES* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0088 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 346 IPR001680 GO:0005515
Lja6g0088 524 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Lja6g0088 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Lja6g0088 524 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Lja6g0088 524 SUPERFAMILY WD40 repeat-like 218 512 IPR036322 GO:0005515
Lja6g0088 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Lja6g0088 524 CDD WD40 224 512 - -
Lja6g0088 524 SMART WD40_4 340 382 IPR001680 GO:0005515
Lja6g0088 524 SMART WD40_4 298 337 IPR001680 GO:0005515
Lja6g0088 524 SMART WD40_4 385 423 IPR001680 GO:0005515
Lja6g0088 524 SMART WD40_4 472 513 IPR001680 GO:0005515
Lja6g0088 524 SMART WD40_4 253 292 IPR001680 GO:0005515
Lja6g0088 524 SMART WD40_4 208 250 IPR001680 GO:0005515
Lja6g0088 524 SMART WD40_4 426 465 IPR001680 GO:0005515
Lja6g0088 524 Gene3D - 200 514 IPR015943 GO:0005515
Lja6g0088 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 350 385 - -
Lja6g0088 524 ProSitePatterns Trp-Asp (WD) repeats signature. 369 383 IPR019775 -
Lja6g0088 524 Coils Coil 115 135 - -
Lja6g0088 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515
Lja6g0088 524 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Lja6g0088 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 391 IPR001680 GO:0005515
Lja6g0088 524 Pfam WD domain, G-beta repeat 484 512 IPR001680 GO:0005515
Lja6g0088 524 Pfam WD domain, G-beta repeat 254 291 IPR001680 GO:0005515
Lja6g0088 524 Pfam WD domain, G-beta repeat 358 382 IPR001680 GO:0005515
Lja6g0088 524 Pfam WD domain, G-beta repeat 300 335 IPR001680 GO:0005515
Lja6g0088 524 Pfam WD domain, G-beta repeat 388 423 IPR001680 GO:0005515
Lja6g0088 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 432 IPR001680 GO:0005515
Lja6g0088 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 523 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Lja6g0088 524 SUPERFAMILY RING/U-box 1 53 - -
Lja6g0088 524 CDD RING-Ubox_PRP19 3 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0088 Lja-Chr6 1612078 1620648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0088 1 519 U-box Gene Family AT1G04510 74.566 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0088 K10599 - gmx:100527039 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0088 6 1612078 1620648 Lja6g0088 6 1612078 1620648 ECH