Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0087 ATGTTGTTTACATTGTTTCTATGTCACACATTTCAGGACGAAATCTCGAGTCCAATTAGTGCGCGAATATTTGAGCTTTGTCATGACCCTGAATTGTTCCCGGAGTCAATTCAGAATTCTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGAGAATTCCTCATATGCAGCTTTAGATGCAGACAATAAGATCAATAGTACTACTGAAACCAGCACCATCAATAACCAAAACACAACAAACAGCAATAACTTGTCTATTATCTTTGATTCCCAAGAAGAAATTGAAAATGACATATCTGCTTCCATTGACTTTTCATCATCTCCAGCTTTTGTTCTCCCCATCACAACAACTCAGCAGGAACAACAATTTGATTTCTCTTCAGCAGGTTCAGTTTTGAAGGGTCTCTCTTCTCAGTATCTCACTGATCCTGTGGTTGCTGCTGCACCTCTTGTTGGGGCCCCATTACCATCTGTTTTTGATGATGACTGCATATCTTCCATCCCTTCTTATCTCCCTCTTAACCCTTCATCTCCTTCTTGCTCTTATCTCAGTTCTGCCATGGGAGTTTACATGCCTGGGACCCTCAACACTGCTTTGTCTGCTGATAGTTCTGGGTTGTTTGGTGGGAGCATTCTACTGGGTTCTGAACTGCAGACACAAGAATTGGACTACCAGGGAGAAAATGGTGGAATATATTGTACAGATTCAATTCAGCATATGTTTAATCCACCAGACCTTCAGGCACTTGATGCTGAGAGTCAGAAACTGGTAGCTGGTGCTGGGAGTACTTCTGCCACTTTGGCACCAGAAATCTCACACTTGGAGGAATCTACCTTAAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCATAGATACATGAAGAAGAGAAATCAGAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGGAAAACTTTGGCAGATAGCAGACCCCGGGTCAGAGGGAGGTTTGCAAAGAATGATGACTTTGGAGAGACTCATAGACCAGCTTGTAGCAGTCATGAAGAAGATGATGAAGAAATAGTTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCCCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCACTCTTTGATTTGA 1164 0.4158 MLFTLFLCHTFQDEISSPISARIFELCHDPELFPESIQNSEVTSSSNCCHEENSSYAALDADNKINSTTETSTINNQNTTNSNNLSIIFDSQEEIENDISASIDFSSSPAFVLPITTTQQEQQFDFSSAGSVLKGLSSQYLTDPVVAAAPLVGAPLPSVFDDDCISSIPSYLPLNPSSPSCSYLSSAMGVYMPGTLNTALSADSSGLFGGSILLGSELQTQELDYQGENGGIYCTDSIQHMFNPPDLQALDAESQKLVAGAGSTSATLAPEISHLEESTLKVGKLSVEQRKEKIHRYMKKRNQRNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETHRPACSSHEEDDEEIVVKEDDDMVDSSDIFAHISGVNSFKCNYSIHSLI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0087 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 12 387 - -
Lja6g0087 387 MobiDBLite consensus disorder prediction 329 349 - -
Lja6g0087 387 Pfam CCT motif 290 332 IPR010402 GO:0005515
Lja6g0087 387 PANTHER CCT MOTIF FAMILY PROTEIN 12 387 - -
Lja6g0087 387 ProSiteProfiles CCT domain profile. 290 332 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0087 Lja-Chr6 1608046 1610974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0087 269 339 C2C2-CO-like Transcription Factor Family AT5G24930 39.437 9.73e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja6g0087 CCT 6.8e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0087 - - lja:Lj6g3v0082150.1 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0087 6 1608046 1610974 Lja6g0087 6 1608046 1610974 ECH