Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0086 ATGTCGAAGCGAGGTCCTGGTGGTTCAGCTGGTAACAAGTTCAGGATGTCACTGGGTTTACCAGTGATGAATTGTTGCCTTCTGCTTGTGTTTGTGACATGGTTAATGGGGAAGCCTGATCTTAGGAAGAAGGTTTTGCCTGCTGTTGTTGTCAGAAGAAAGGATGGGGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTAAACCCAAAGGGAGAAATGAAAGGTTCTGCCATTACGGGGCCTATCGGAAAGGAGTGTGCTGATCTGTGGCCTAGAATTGCAAGTGCTGTCAATGCCATCGTTTGA 312 0.4583 MSKRGPGGSAGNKFRMSLGLPVMNCCLLLVFVTWLMGKPDLRKKVLPAVVVRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAVNAIV* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0086 103 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 24 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja6g0086 103 PANTHER - 25 103 - -
Lja6g0086 103 SMART Ribosomal_L14_2 19 103 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja6g0086 103 SUPERFAMILY Ribosomal protein L14 36 103 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lja6g0086 103 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 25 103 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja6g0086 103 Pfam Ribosomal protein L14p/L23e 41 102 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja6g0086 103 PANTHER - 1 24 - -
Lja6g0086 103 Gene3D Ribosomal protein L14 25 103 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0086 Lja-Chr6 1546076 1548708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0086 1 103 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 63.571 2.10e-49 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0086 K02894 - csin:114305459 156.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0086 6 1546076 1548708 Lja6g0086 6 1546076 1548708 ECH