Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0075 ATGTTGAAAGCAACAGCATCTGGAGTTTTAATTGGCATGCTTTTCATGTGTGCATATGCAACAACAGATCATGGATATTCCAAATGCAACTGTGATGATGAGTCCAGCTGGTGGACAATTGAAACCATTCTTGAGAGCCAGAAAGTTGGTGATTTCCTCATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTTCTTTACTTCATCAGTTGCACAAATGTTCCCTTCAAATGGGTCCTCATTCAGTTCATTGCCTTCATTGTTCTCTGTGGAATGACACATTTGCTGAATGGTTGGACCTATGGCCCACATTCCTTCCAAGTCATGGTGGCACTCACTGTCTTAAAAGCTCTCACTGCTTTGGTATCATGTGCCACTGCCATAACCCTCATCACTTTAATCCCTTTGCTCCTAAAAGTGAAGGTCAGGGAATTCATGCTGAAGAAGAAGACCAGGGATCTTGGGAGGGAGGTTGGTATGATAATGAAGCAAAAGGAAACTGGAATGTATGTGAGGATGCTAACTCATGAGATTCGGAAGTCGCTTGATCGGCATAAGATTCTCTACACCACATTGGTTGAGCTTTCCAAAACTCTGGGATTGCAGAACTGTGCAGTATGGATGCCTAATGTTGATAAAACTGAGATGAACCTCACACATGAATTGAATGAGAGGAATAGGAACTTTTCTATCTCTACTACTGATCCTGATGTGGTGAGAATCAAGGAAACTTCTGGAGTGAACATAATTGGTTATGACTCTGAGCTTGCGGCTGCTAGTTGTGGGATTTCGAGCGAGGCAGGTGCAGTTGCTGCGATCCGAATGCCAATGCTTCGGGTTCGTGATTTCAAAGGGGGAACGCCAGAGATAACTCCCGCGATTTATGCGATATTGGTCTTGGTGCTCCCTAGTGGAGAGCCTAGATCTTGGAGCTTTCAAGAGCTCGAGATAATCAAGGTGGTTGCTGATCAGGTGGCCGTGGCTCTCTCGCATGCTGCGATTCTCGAAGAATCACAACTCATGAGGGAGAAGTTGGAGGACCAAAATCGAGCGTTGCAACAGGAGAAGATGAACGCTATGATGGCGAGCCAGGCCAGAGCTTCATTTCAGAAGGTCATGAGTAGTGGAATGAGAAGGCCAATGCACACAATTCTGGGTTTGCTTTCGATGTTACAAGATGAGAATTTGAAGAGTGAACAGAAACTTATTGTGGATTCAATGCTAAGGACTAGCATTGTCCTGTCAAATTTGATGAATGATGCCATGGACAGCTCGGATAGGGATGACGGAAGGTTTCCTTTGGAGATGAAACCTTTCGGGTTGCATAGCATGATAAAAGAAGCAGCTTGCCTTGTGAAGTGCTTGTGTGTTTTTAGGGGTTTAGGTTTTAGAGTCGAGATTGATAAGTCTTTGCCAGACAATGTTTTAGGTGATGAAAGGAGGTTATTTCAGGTGATTTTGCATATGGTTGGGAATGTCATTGATGGTAACCATGGGGGTGGGATTCTTGTACTTAAAGTTTTCGCAGAAACAGGAAGTCAAGGAAGGAATGACCAGGGATGGACAGCATGGAGACCAAGCTCTTCTAATGGGGATGTGCATATTAGATTTGAGATAGGGATGAGTAATAGTGATTCTGAATTGAATACTTCAGTTACCGGGCAGCTTGTGGGCTGGAAGCATTTTGGTGATTCAGTTGAGGAAAGGTTGAGCTTCAGCATTTGCAAGAGGATAATCCAGATGATGCAAGGGAACATAAGGTTAACACCAAATTCTCAAGGTTTTCCACAAGTCATGACCCTTTCTCTTCGGCTTCAATTACGGCAGTCTATTTCAGTAGCCATACCAGAGCCTGGTGAGAGTTCTGAGCCTTCCAATTCAAATGCTTTCTTCAGAGGTCTGCAAGTCTTGTTGGCAGACAGTGACGATGTGAACAGAGCAGTGACACAAAGGTTGCTTCAGAAATTAGGCTGTGTTGTTACATCTGTTTCTTCAGGATTTGAATGCCTCAGTGTTATTGGATCTTCCTTTAAAGTTATTCTCTTGGATCTTCACATGCCTGATTTAGATGGATTTGAAGTAGCCGCGAGGATTCGGAAGTTCAGGAGCCGGAATTGGCCTATGATTGTCGCCTTGACAGCGAGTGCCGAAGAAGGTTTGTGGGAAAGATGCAAGCAAGCCGGCATCAATGGAGTTATCCGGAAGCCGGTCTTGTTGCAAGGAATTGCAGGTGAACTCAGAAGAATCCTGATGCAGGGAAATAAAGTCATGTGA 2274 0.445 MLKATASGVLIGMLFMCAYATTDHGYSKCNCDDESSWWTIETILESQKVGDFLIAVAYFSIPIELLYFISCTNVPFKWVLIQFIAFIVLCGMTHLLNGWTYGPHSFQVMVALTVLKALTALVSCATAITLITLIPLLLKVKVREFMLKKKTRDLGREVGMIMKQKETGMYVRMLTHEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVDKTEMNLTHELNERNRNFSISTTDPDVVRIKETSGVNIIGYDSELAAASCGISSEAGAVAAIRMPMLRVRDFKGGTPEITPAIYAILVLVLPSGEPRSWSFQELEIIKVVADQVAVALSHAAILEESQLMREKLEDQNRALQQEKMNAMMASQARASFQKVMSSGMRRPMHTILGLLSMLQDENLKSEQKLIVDSMLRTSIVLSNLMNDAMDSSDRDDGRFPLEMKPFGLHSMIKEAACLVKCLCVFRGLGFRVEIDKSLPDNVLGDERRLFQVILHMVGNVIDGNHGGGILVLKVFAETGSQGRNDQGWTAWRPSSSNGDVHIRFEIGMSNSDSELNTSVTGQLVGWKHFGDSVEERLSFSICKRIIQMMQGNIRLTPNSQGFPQVMTLSLRLQLRQSISVAIPEPGESSEPSNSNAFFRGLQVLLADSDDVNRAVTQRLLQKLGCVVTSVSSGFECLSVIGSSFKVILLDLHMPDLDGFEVAARIRKFRSRNWPMIVALTASAEEGLWERCKQAGINGVIRKPVLLQGIAGELRRILMQGNKVM* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0075 757 Pfam Response regulator receiver domain 636 737 IPR001789 GO:0000160
Lja6g0075 757 PANTHER ETHYLENE RESPONSE SENSOR 2 10 755 - -
Lja6g0075 757 SMART REC_2 634 750 IPR001789 GO:0000160
Lja6g0075 757 ProSiteProfiles Histidine kinase domain profile. 372 605 IPR005467 -
Lja6g0075 757 Gene3D - 337 430 - -
Lja6g0075 757 ProSiteProfiles Response regulatory domain profile. 635 750 IPR001789 GO:0000160
Lja6g0075 757 CDD HATPase_ETR2_ERS2-EIN4-like 471 603 - -
Lja6g0075 757 CDD REC_ETR-like 634 746 - -
Lja6g0075 757 Gene3D - 431 610 IPR036890 -
Lja6g0075 757 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 10 755 - -
Lja6g0075 757 SMART gaf_1 183 339 IPR003018 GO:0005515
Lja6g0075 757 SUPERFAMILY GAF domain-like 186 332 - -
Lja6g0075 757 Gene3D - 629 754 - -
Lja6g0075 757 SMART HisKA_10 365 430 IPR003661 GO:0000155|GO:0007165
Lja6g0075 757 SUPERFAMILY CheY-like 631 749 IPR011006 -
Lja6g0075 757 PIRSF Ethylen_sen_hybr_HK 1 757 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lja6g0075 757 Gene3D - 170 336 IPR029016 -
Lja6g0075 757 CDD HisKA 363 425 IPR003661 GO:0000155|GO:0007165
Lja6g0075 757 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 419 591 IPR036890 -
Lja6g0075 757 Coils Coil 335 362 - -
Lja6g0075 757 Pfam GAF domain 183 329 IPR003018 GO:0005515
Lja6g0075 757 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 351 431 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0075 Lja-Chr6 1406328 1409936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0075 23 755 Miscellaneous Gene Families AT3G04580 56.059 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja6g0075 GAF 2.1e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0075 K14509 - gmx:100802948 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0075 6 1406328 1409936 Lja6g0075 6 1406328 1409936 ECH