Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0074 ATGGAGGTGGCCGGAGGAGCTGATGTTGCTGAGAGCGTGGCGCAGTTCGCGAGGCGGCGCCAGCGCGGGGTTTGCGTTCTTAGCGGGAGTGGCGCTGTGGCCAATGTTACCCTACGTCAGCCTGCGGCGCCGGGAGCTGTGGTGGCGCTTCATGGAAGGTTTGAGATCTTGTCCTTAACTGGGGCTTTTCTTCCTGGACCTGCTCCTCCAGGCTCCACAGGACTCACAGTGTACCTTGCTGGAGGACAGGGACAGGTTGTGGGAGGGAGTGTTGTTGGATCTTTAGTTGCTGCTGGACCTGTCATGGTGATTGCTGCTACTTTTGCCAATGCTACTTATGAGAGACTGCCCCTTGAGGAGGATGATGATGATGGTGGTGGTGGTAGCACTGTTCATGGAGGAGGAGGAGGAGGTGTTGGAGGTTCTCCTCCTGGAATTGGAAGCGGTGGTGGTGGGGCCCAGTTGCAGCAGCCTGGAGGACTGCCAGATCCATCTTCTTTGTATAATCTGCCACCAAATTTGCTGTCCAATGGAGGGCATGAACCTTTTCCTTGGTCTCATGGAATTAGGCCACCTTACTAA 582 0.5584 MEVAGGADVAESVAQFARRRQRGVCVLSGSGAVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEEDDDDGGGGSTVHGGGGGGVGGSPPGIGSGGGGAQLQQPGGLPDPSSLYNLPPNLLSNGGHEPFPWSHGIRPPY* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0074 193 MobiDBLite consensus disorder prediction 118 193 - -
Lja6g0074 193 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 193 IPR014476 GO:0003680
Lja6g0074 193 MobiDBLite consensus disorder prediction 159 173 - -
Lja6g0074 193 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 109 IPR005175 -
Lja6g0074 193 ProSiteProfiles PPC domain profile profile. 1 132 IPR005175 -
Lja6g0074 193 PANTHER DUF296 DOMAIN PROTEIN 1 193 - -
Lja6g0074 193 PIRSF ESCAROLA 1 191 IPR014476 GO:0003680
Lja6g0074 193 Gene3D - 1 123 - -
Lja6g0074 193 CDD DUF296 2 80 IPR005175 -
Lja6g0074 193 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0074 Lja-Chr6 1331414 1333222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0074 1 193 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 65.174 5.30e-70 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0074 - - gmx:102663643 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0074 6 1331414 1333222 Lja6g0074 6 1331414 1333222 ECH