Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0068 ATGGCGGAACATTCCGCTGCAACAGAAGAAGCTGAAGGAGGAGGAGGAGGAACATTCACATTCCAGAAGGTTCCTTCCCCATCGAACAACAACAACGACGTCGTTTACATCAACGGCCAGCGCGTACTCGTCGCTCAGCCCCTCACCGTCGTCCGCGCCCTCACCAGCACCGGCGGCGCCCGCGTCCACGCCACGCCGCCGCTGAAGGTGAAGGATGAGCCGCTCGAAGAAGAAGCGGTTCCCGAGGCGGCGCGAAAACGGTCGATGCTCTCGTTTGACGATTTTCTCAAGGCCACGAACACGAAAGTCGCGTCCGTCGAGGACTCGCTGAAATCAATGGAAGGAGAATCGCCGATTCAAACGGCGCAAGAAGTTGCTGATGAGGGAGTCGTTGATATGGACACCGTTTGTGAGGCGGTGAAGGAAGAACCGGTTGGGGAACCGTCGATTCAGGCGATGGAAGGAGTCATCGATGTGGACACCGTTAAGGAAGAATCGGTTGTGGAACCATCGATTCGAGCGATGGAAGGAGTTATTGATGTGGAGAAGGTTTGTGTGAAGAAGGAAGCGGTTAAGGATGAGGTTAAGGTGGTGAAGGTGGTGAAGAAGGAGGTGGTGGAGGAGAGGAGGATCCCGAATCTGGAGGATGGCGAGTTTCCTGATGAACCAGGGTGGTCGTTGCTGGGAAGGAAGGTTGAGGTGGCCATTTCAACTGCAAGAGGAGTGAAGAGATTGGTGGACAATGAGATTGTTCATTTCAATTTCCCTCTCCCAAATTACTCTTATAAATCCCAATGGATCGTTCGCATCTCTACTATTCGTTCTGGAGAGGTTGGGAGGCTCCCAATGGAATGGGCTAAAGCTATCATTCCACTTGTGCAATCAGGAAATGTGAAGGTTCGAGGCCGATGCATTGCTGCGCCATATAGCCTGCAAATGATGCAAGAAATCATGTTGTTAGTGAGCTTCTATGTTCACAGCTCTGTTTTCACAGAGTGTGTTGATACTTCTTGGAGGCTAGAGGCTTGTGGTAATATAAACACTGCTACTTATCCACTCCTTACACTGCTCAACATGCTAGAGATTAAGCCACATCGGAAGGCTGATTTCACCCCTGATGATATAGATACTCGAAAGCGGTTACTTTATCGGAAGCTTGATTCAGATGAAGCTGCAGCTTTGCCTTTGGTAAAGCGTAGAAAGGGTGGCGAGCCAGCTCCTGAGCAGAATGAAGATGAACAGGCTATTTCTGAGTCAGCATTGAATAAGATTATTGGAGCTGCAGAAATATTTGACCTGGAGGAGAAAGCGGCACCACGCACCCTGACTTGTGAGCTGAAGCCTTACCAAAGTCAAGCTCTCTATTGGATGTCAGAAATTGAGAAAGGAATTGACATTTCAAATGCTGAGAGTAATCTACATCCTTGCTGGTCAGCTTACAATATATGCAATGGAAGGTCAATTTATGTGAACATCTTCACTGGGGAAGCAACAAACAAATTTCCAAAAGCAACAAAGATGGCAAGAGGAGGAATTCTAGCTGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTTTGATTCTCAGTAATCCAGGCAGGTCGAAGATAGGAAACAACTTTATAGATGGTGTAAATGACAATATTATCACAAATAAGAGGAAGAATGCTAGCATCTCAAACAATGTGCAGGGTGGCACTCTAATTGTTTGTCCCATGGCCTTATTAGGTCAGTGGAAGGATGAGCTTGAAACCCATTCAGCTATTCGCAGTATATCCATATTTGTCCATTATGGTGGGGGTAGAACCAATAGTGCTGAGTTGATTTCAGAGTATGATGTTGTCCTAACAACTTATGGAGTTCTCTCAGCTGCATTCAGAAGTGATGGGGAGAATAGCATCTATCACAAGATCCAATGGTATAGGGTGGTGCTAGACGAAGCTCATCATATCAAAGCGCATAAAAGTCAGGTTGCCCAGGCTGCTTTTGCTTTGTCCTCTCACTGCCGCTGGTGTCTAACTGGAACGCCTATTCAGAATAGTTTAGAAGACCTATTCAGTCTCTTGCACTTCTTGGGGGCTGAACCTTGGTGCAGCTGGGCATGGTGGCACAAGCTGGTTCAAAGGCCATATGAGAATAATGACCCAAGGGCCCTGAAATTGGTCAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACAGAGGATAAATATGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTAAATTGATTGAGTGCGAACAATCGGAATCTGAACGGGACTTCTATGATGCTCTCTTTACGAGATCTAAGGTTCAATTTGATCAGTATGTTGCACAAGGAAAAGTTCTTCATCATTATGCCAATATCCTCGACCTACTTATGCAGTTAAGACGGTGCTGTAACCATCCATTTCTGGTTCTGTGTGGAAGTAATCCCCAGAAATATGCAGACTTAAGCAGACTTGCAAGAAAATTCCTCCAGACAAATACTGAATCATCTGATATATGTGCCCCAAGTGATCCACAGCAACATGCAGAGTTGAACAGACTTGCTAGTAGGTTCCTTCAAAATTGTGATTCTGCCTCCAACTCTATCCAATCCCGTGGGTACATTGATGAGGTTTTGGAGCATATTCAAAAGGGTGACACTGTAGAATGCTCTATATGTATGGATTCACCAGATGATCCTGTGTTCACACCATGTGCACATAGGTTTTGTAGAGAGTGTTTATTCAATTGCTGGGGCAACTCAGCGGGTGGTAATTGTCCAATCTGTCGTCAGTCGCTCCTGAAAAGTGATCTGATTACTTGTCCATCTGAAAGCCCTTTCAAGGTTGATATTGAGAACAATATGACTGAATCTTCAAAAGTTTCTGAGCTAATGAAATACTTGGAACGTATTCAGATGTCAACTGATGAGAAGAGTATTGTCTTTAGTCAGTGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGAAGTAGAGGAATTGGTTATTTAAGATTTCATGGGAAATTGACTCAAAAACAGAGGGAGAAAGTTCTGGATGAATTTAACAAGACAAGTGAGAAAAGGGTGTTGTTGATGTCACTAAAAGCTGGTGGTGTGGGCTTGAACTTGACTGCAGCCTCCAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATTGGACAAAAGAGAAAAGTTATTGTTAGAAGATTCATCGTTAAGAACACAGTGGAAGCTCGTTTGCAACAAGTCCAAGCCAGGAAACAGATGATGATATCTGGTGCCCTCACCGATGATGAAGTTCGGTCTGCTAGGATTCATGACCTCAAAATCTTATTCTCATGA 3390 0.4501 MAEHSAATEEAEGGGGGTFTFQKVPSPSNNNNDVVYINGQRVLVAQPLTVVRALTSTGGARVHATPPLKVKDEPLEEEAVPEAARKRSMLSFDDFLKATNTKVASVEDSLKSMEGESPIQTAQEVADEGVVDMDTVCEAVKEEPVGEPSIQAMEGVIDVDTVKEESVVEPSIRAMEGVIDVEKVCVKKEAVKDEVKVVKVVKKEVVEERRIPNLEDGEFPDEPGWSLLGRKVEVAISTARGVKRLVDNEIVHFNFPLPNYSYKSQWIVRISTIRSGEVGRLPMEWAKAIIPLVQSGNVKVRGRCIAAPYSLQMMQEIMLLVSFYVHSSVFTECVDTSWRLEACGNINTATYPLLTLLNMLEIKPHRKADFTPDDIDTRKRLLYRKLDSDEAAALPLVKRRKGGEPAPEQNEDEQAISESALNKIIGAAEIFDLEEKAAPRTLTCELKPYQSQALYWMSEIEKGIDISNAESNLHPCWSAYNICNGRSIYVNIFTGEATNKFPKATKMARGGILADAMGLGKTVMTIALILSNPGRSKIGNNFIDGVNDNIITNKRKNASISNNVQGGTLIVCPMALLGQWKDELETHSAIRSISIFVHYGGGRTNSAELISEYDVVLTTYGVLSAAFRSDGENSIYHKIQWYRVVLDEAHHIKAHKSQVAQAAFALSSHCRWCLTGTPIQNSLEDLFSLLHFLGAEPWCSWAWWHKLVQRPYENNDPRALKLVKGILRTLMLRRTKETEDKYGRPILVLPPTDIKLIECEQSESERDFYDALFTRSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVLCGSNPQKYADLSRLARKFLQTNTESSDICAPSDPQQHAELNRLASRFLQNCDSASNSIQSRGYIDEVLEHIQKGDTVECSICMDSPDDPVFTPCAHRFCRECLFNCWGNSAGGNCPICRQSLLKSDLITCPSESPFKVDIENNMTESSKVSELMKYLERIQMSTDEKSIVFSQWTSFFDLLENPLRSRGIGYLRFHGKLTQKQREKVLDEFNKTSEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRKVIVRRFIVKNTVEARLQQVQARKQMMISGALTDDEVRSARIHDLKILFS* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0068 1129 SMART ring_2 893 932 IPR001841 -
Lja6g0068 1129 CDD DEXDc_SHPRH-like 446 734 - -
Lja6g0068 1129 SMART helicmild6 993 1076 IPR001650 -
Lja6g0068 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 1116 IPR027417 -
Lja6g0068 1129 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 966 1125 IPR001650 -
Lja6g0068 1129 Pfam HIRAN domain 238 319 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lja6g0068 1129 ProSiteProfiles Zinc finger RING-type profile. 893 933 IPR001841 -
Lja6g0068 1129 Gene3D - 495 735 IPR038718 -
Lja6g0068 1129 SMART HIRAN_2 228 325 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lja6g0068 1129 Coils Coil 96 116 - -
Lja6g0068 1129 MobiDBLite consensus disorder prediction 1 28 - -
Lja6g0068 1129 CDD SF2_C_SNF 949 1087 - -
Lja6g0068 1129 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 390 1128 - -
Lja6g0068 1129 PANTHER DNA REPAIR PROTEIN RAD5B 390 1128 - -
Lja6g0068 1129 SMART ultradead3 442 715 IPR014001 -
Lja6g0068 1129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 884 941 IPR013083 -
Lja6g0068 1129 Pfam Zinc finger, C3HC4 type (RING finger) 891 935 - -
Lja6g0068 1129 SUPERFAMILY RING/U-box 889 943 - -
Lja6g0068 1129 ProSitePatterns Zinc finger RING-type signature. 908 917 IPR017907 -
Lja6g0068 1129 Gene3D - 750 1128 IPR027417 -
Lja6g0068 1129 Pfam SNF2-related domain 449 812 IPR000330 GO:0005524|GO:0140658
Lja6g0068 1129 Pfam Helicase conserved C-terminal domain 965 1076 IPR001650 -
Lja6g0068 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 734 IPR027417 -
Lja6g0068 1129 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 502 696 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0068 Lja-Chr6 1232074 1238013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0068 68 1128 RAD5 or RAD16-like Gene Family AT5G43530 55.201 0.0 1176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja6g0068 SNF2_N 2.5e-78 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0068 K15505 - gmx:100806677 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0068 6 1232074 1238013 Lja6g0068 6 1232074 1238013 ECH