Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0064 ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTCCTCGATTACTCCTTCCTTGATCCTCCTCCCACCGATTTCCTCTGGTCCAATCCCAATCAAAGTGTGATCGCGGAAGCCGACTTTCCTAGTGTTGCTGTTGCCAGTCAAGAGAACACCAGGAAGAGGGGGCGCACTGATTCATGCTGCAAGGCGGGAACAAAAGCCTGCCGTGAGAAACAACGGAGGGAGAAACTCAATGAAAGGTTTTGTGAATTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAAAACAGATAAGCCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACTGAAGCTCAGGAACTCAAAGAAACAAATGAGAAATTATTGGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTTCTTAAAGCAGATAAAGAAAGGATTGAGAAGAAGTTGAAAGCCTTGCCCGTCTCAGCAGGAGGGTTTTTGCCTCCCCCTATGGCAGCATATCAACCAACGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTATATTCCAATGTGGCAATATCTTCCTTCATCTGCCCGAGATACATCCCACGATCATGAGCTCAGGCCTCCTGCTGCGTAG 651 0.4593 MDSLEDSGCWDFLDYSFLDPPPTDFLWSNPNQSVIAEADFPSVAVASQENTRKRGRTDSCCKAGTKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKKLKALPVSAGGFLPPPMAAYQPTVNKMAVYPNYGYIPMWQYLPSSARDTSHDHELRPPAA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0064 216 CDD bHLH_AtILR3_like 66 141 - -
Lja6g0064 216 SMART finulus 67 118 IPR011598 GO:0046983
Lja6g0064 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Lja6g0064 216 PANTHER TRANSCRIPTION FACTOR BHLH104 1 216 - -
Lja6g0064 216 PANTHER BHLH TRANSCRIPTION FACTOR 1 216 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lja6g0064 216 Gene3D - 61 145 IPR036638 GO:0046983
Lja6g0064 216 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Lja6g0064 216 Coils Coil 102 157 - -
Lja6g0064 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0064 Lja-Chr6 1217063 1221298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0064 51 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 70.060 3.93e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g0064 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0064 - - gmx:100787583 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0064 6 1217063 1221298 Lja6g0064 6 1217063 1221298 ECH