Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0063 ATGGATTTTGCAAGCAGAAGGCACTTGATCAATGTGTCACGTACGCCATGTATGTCACAAGCACTTTCCCCTATGGCATTTCATGGGGATGTGGTTGTGCATCCTTCTAGTACTACAAATTTTCCCTTGATACCAATCATTGTAATAGGAATGTTGGCCACATCTTTCTTTCTTATGGGCTACTACATCTTTGTGGTCAAGTGCTGCCTCAATCGGAACCGTGTTGATCTTGCAAGAGTTAGAAGATTTTCTCTATCATGGCAACGTGAAGAGCCGTTTGCATCAGAGCCTAGAGGATTGGAGGAAGCAGTGATTCGGTCAATCCCAGTGATTCATTACAAGACTGAAAGAGACAGAGACTTCGGTGGTGAGAGAAGCATTTGTGAATGTGTAGTTTGCTTGAATGAGTTTCACGAAGATGAGAAGCTCAGGGTTATACCAAACTGTGGCCATGTCTTTCACATTGATTGCATAGATATTTGGCTTCAAAACAATGTGAGTTGCCCTCTTTGCAGAAGATGCATTTTCTTGACAAGCCAAACCCATGTTGACCAGCTACTCATGACTCCAAGACCTTCCCCTCAATATCAAAGCCAAAATGGTGATAACCTCATTGGTGGTGATGGAGATTTTGTTGTGATTGTATTGGATGAGGAACATGAGGGTGAACAAAACTTGCAAGGAAGAAAAGAAAGAAGTAAAGACTTGGAGTTGCCAGCAGGTCCTATTGGTCCTTCACAAAGGAAGTTGGAACAGAGAATTCTGAAGAAAAAAGCAAGGAAGCTTCATAAAATGATCAGCATGGAGGATGGAGCCAAAGATGATGAGTTTTCAGTTCAACCCATTAGGAGATCTTTCTCCATGGAGTTATCAGTGCATACATAA 885 0.4203 MDFASRRHLINVSRTPCMSQALSPMAFHGDVVVHPSSTTNFPLIPIIVIGMLATSFFLMGYYIFVVKCCLNRNRVDLARVRRFSLSWQREEPFASEPRGLEEAVIRSIPVIHYKTERDRDFGGERSICECVVCLNEFHEDEKLRVIPNCGHVFHIDCIDIWLQNNVSCPLCRRCIFLTSQTHVDQLLMTPRPSPQYQSQNGDNLIGGDGDFVVIVLDEEHEGEQNLQGRKERSKDLELPAGPIGPSQRKLEQRILKKKARKLHKMISMEDGAKDDEFSVQPIRRSFSMELSVHT* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0063 294 Pfam Ring finger domain 129 172 IPR001841 -
Lja6g0063 294 SUPERFAMILY RING/U-box 129 178 - -
Lja6g0063 294 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Lja6g0063 294 MobiDBLite consensus disorder prediction 222 237 - -
Lja6g0063 294 PANTHER RING-H2 FINGER PROTEIN ATL16 31 291 IPR044600 GO:0016567|GO:0016740
Lja6g0063 294 SMART ring_2 130 171 IPR001841 -
Lja6g0063 294 MobiDBLite consensus disorder prediction 222 243 - -
Lja6g0063 294 PANTHER RING-H2 FINGER PROTEIN ATL16 31 291 - -
Lja6g0063 294 CDD RING-H2_PA-TM-RING 129 172 - -
Lja6g0063 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0063 Lja-Chr6 1207519 1208403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0063 36 292 C3H Transcription Factor Family AT1G04360 44.561 3.59e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0063 - - gmx:100794749 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0063 6 1207519 1208403 Lja6g0063 6 1207519 1208403 ECH
Lja1g1043 1 10397895 10398863 Lja6g0063 6 1207519 1208403 PCT