Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0062 ATGGATTGTTCCTCCAACCCCCACTCATCAAACTCCGATTTTTCACCAGAATCCTCATTCGGGTCACCAGAATCGTTTTCTTTGTACAATCACTCCCTCCCCTTCAACGAAAATGACCCAGAAGAGATGCTTCTCTATGGCATGATCACATCATCACAACAACAAGCACCGATTGGCAGCAAGGTGAATGAGGCAAGCAGCATGGAGAAGAACAAGGCCTACCGAGGCGTCCGGCGGAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACGAGGCACGGCATAAGGGTGTGGCTGGGAACCTTTGACAGCGCTGAAGCAGCAGCACTGGCTTATGATCAAGCTGCTTTCGCCATGAGGGGTTCCTCTGCAACTCTCAATTTCCCAATTGAGAAGGTCAAGGAGTCACTCAGGGACATGAATTACCATCTCTCTCAGGATGGTGGTGGTGATGGGTGTTCCCCTGTGGTGGCTTTGAAGAGAAAGCACTCCATGAGGCGCAAAATGGGTGCCAAGAAACAGAAGAATGAGACTGATGTTAGGATAGGCAATGTGGTTGTCTTTGAGGATCTAGGAGCAGAGTATTTGGAACAGTTGTTAATGTCATCAGAAAATCAAACTATTTGGTGA 636 0.4953 MDCSSNPHSSNSDFSPESSFGSPESFSLYNHSLPFNENDPEEMLLYGMITSSQQQAPIGSKVNEASSMEKNKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGSSATLNFPIEKVKESLRDMNYHLSQDGGGDGCSPVVALKRKHSMRRKMGAKKQKNETDVRIGNVVVFEDLGAEYLEQLLMSSENQTIW* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0062 211 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Lja6g0062 211 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Lja6g0062 211 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Lja6g0062 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 204 - -
Lja6g0062 211 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Lja6g0062 211 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Lja6g0062 211 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Lja6g0062 211 MobiDBLite consensus disorder prediction 1 22 - -
Lja6g0062 211 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Lja6g0062 211 PANTHER DNA-BINDING DOMAIN 28 204 IPR044808 GO:0003700|GO:0009873
Lja6g0062 211 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0062 Lja-Chr6 1177135 1177851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0062 12 211 AP2-EREBP Transcription Factor Family AT3G23240 61.033 2.38e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja6g0062 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0062 K14516 - tcc:18603203 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0062 6 1177135 1177851 Lja6g0062 6 1177135 1177851 ECH
Lja1g1042 1 10385367 10386038 Lja6g0062 6 1177135 1177851 PCT