Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0061 ATGATGCCTCTTATAAAACACTCAACAACATCATCAACCAAAGGATCTTTATTATACTTTGCTCTTTTCTTAATTCCTCTTGCCTTTTCTTTTTCCTTGCTTGTTAGTTTATCTTTGAGGATTGATTGGTATCATTTTTGGGTCAGAGCCATTGTCATGGAACGAGAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGCTTTCAGAGACAGAGATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAGGCACCAATTAAGATATGTGGAGATATCCATGGCCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGTTCCAATTACTTGTTTCTAGGCGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAAAATAAAATATCCAGAAAATTTTTTCCTTCTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATGATGAATGTAAAAGGAGATTCAATGTCAGGATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATCATTGAAGATAAGATCCTGTGCATGCATGGTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACGTCCAGCAGAAGTTCCAGAAACTGGTCTGTTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAATGAGTGAACGTGGAGTTTCATATACTTTTGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATTTGTAGAGCGCACCAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGAGACACTTATGTGCTCTTTTCAGATATTAAGGCCTGTGGATCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGGCTAGTACTCCAAAAGAATCTTGCAGGCATTTCTTGGTGCTAAAGTATGACCTGATTGACCTTACTTAG 1158 0.4041 MMPLIKHSTTSSTKGSLLYFALFLIPLAFSFSLLVSLSLRIDWYHFWVRAIVMEREFLDAIINRLLEVRGRPGKQVQLSETEIKKLCMVSRDIFLKQPMLLELEAPIKICGDIHGQYADLLRLFEHGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRIWKTFSDCFNCLPVAAIIEDKILCMHGGLSPELHSLNQISMLPRPAEVPETGLLCDLLWSDPSKEIQDWGMSERGVSYTFGATRVAEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILRPVDHKRPKFGFGKTTRFKASTPKESCRHFLVLKYDLIDLT* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0061 385 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 53 373 - -
Lja6g0061 385 Gene3D - 50 355 IPR029052 -
Lja6g0061 385 Pfam Serine-threonine protein phosphatase N-terminal domain 58 104 IPR031675 -
Lja6g0061 385 Pfam Calcineurin-like phosphoesterase 106 298 IPR004843 GO:0016787
Lja6g0061 385 SUPERFAMILY Metallo-dependent phosphatases 45 353 IPR029052 -
Lja6g0061 385 PRINTS Serine/threonine phosphatase family signature 231 258 IPR006186 GO:0016787
Lja6g0061 385 PRINTS Serine/threonine phosphatase family signature 135 162 IPR006186 GO:0016787
Lja6g0061 385 PRINTS Serine/threonine phosphatase family signature 202 228 IPR006186 GO:0016787
Lja6g0061 385 PRINTS Serine/threonine phosphatase family signature 288 308 IPR006186 GO:0016787
Lja6g0061 385 PRINTS Serine/threonine phosphatase family signature 168 192 IPR006186 GO:0016787
Lja6g0061 385 PRINTS Serine/threonine phosphatase family signature 310 326 IPR006186 GO:0016787
Lja6g0061 385 PRINTS Serine/threonine phosphatase family signature 106 133 IPR006186 GO:0016787
Lja6g0061 385 SMART pp2a_7 78 348 IPR006186 GO:0016787
Lja6g0061 385 ProSitePatterns Serine/threonine specific protein phosphatases signature. 169 174 IPR006186 GO:0016787
Lja6g0061 385 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 53 373 - -
Lja6g0061 385 CDD MPP_PP1_PPKL 57 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0061 Lja-Chr6 1160168 1164937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0061 107 294 Calmodulin-binding Proteins AT5G63870 32.287 2.02e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0061 K06269 - gmx:100780047 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0061 6 1160168 1164937 Lja6g0061 6 1160168 1164937 ECH