Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0056 ATGGTGAGAGCTCCTTGCTGTGAAAAGATTGGACTGAAGAAAGGTCCTTGGACCTCAGAGGAGGATCAAATTCTCATATCCTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCATGCTGGGCTATTAAGATGTGGAAAGAGCTGCAGACTACGGTGGATTAACTATTTAAGGCCTGATATCAAGAGAGGAAATTTCACAGCTGAAGAAGAGGAATTAATCATTAAGATGCATGAGTTGCTAGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCTAATAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCACTTGAAGAAAAGGCTACAGAAAACAAACAACCAATCCAATTCAGATAGAAAAAGAGTTTCCAAACCAAAAATCAAACGATCTGATTCCAGTTCCAGCACACTAACTTCATCCAGTGATTTTTCGTCATCAGTCAATGAAGGAGTAGAAATTATGGATAACAGCATCAAGAGTGAGGAGGACATAGAATCTCTGGAGACAATAATGCCTGTAATTGATGAAAGCTTTTGGTCAGAGGAAGCAATGGATGATGAAAGCTCCACCATGCCATCAAATTCTTTGACAGTGTCAAATGAATTACAACCTCAATGTTCAGTTAATTCAGTGGAAACCTTCCAAGTACAGAGTAATGGTTCAAAAATTGATGATGGTATGGATTTCTGGTATGACTTGTACATCAGATCAGGGGAATCAACAGAATTGCCAGAGTTGTGA 765 0.4 MVRAPCCEKIGLKKGPWTSEEDQILISYIQKHGHGNWRALPKHAGLLRCGKSCRLRWINYLRPDIKRGNFTAEEEELIIKMHELLGNRWSAIAAKLPNRTDNEIKNVWHTHLKKRLQKTNNQSNSDRKRVSKPKIKRSDSSSSTLTSSSDFSSSVNEGVEIMDNSIKSEEDIESLETIMPVIDESFWSEEAMDDESSTMPSNSLTVSNELQPQCSVNSVETFQVQSNGSKIDDGMDFWYDLYIRSGESTELPEL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0056 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja6g0056 254 MobiDBLite consensus disorder prediction 137 156 - -
Lja6g0056 254 CDD SANT 69 112 IPR001005 -
Lja6g0056 254 Gene3D - 13 66 - -
Lja6g0056 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja6g0056 254 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja6g0056 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja6g0056 254 MobiDBLite consensus disorder prediction 120 136 - -
Lja6g0056 254 CDD SANT 16 61 IPR001005 -
Lja6g0056 254 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 244 - -
Lja6g0056 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja6g0056 254 MobiDBLite consensus disorder prediction 112 156 - -
Lja6g0056 254 SMART sant 66 114 IPR001005 -
Lja6g0056 254 SMART sant 13 63 IPR001005 -
Lja6g0056 254 Gene3D - 69 144 - -
Lja6g0056 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja6g0056 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 244 - -
Lja6g0056 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0056 Lja-Chr6 1069411 1071182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0056 1 254 MYB Transcription Factor Family AT2G31180 50.373 2.06e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g0056 Myb_DNA-binding 5.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0056 K09422 - gmx:100806975 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0056 6 1069411 1071182 Lja6g0056 6 1069411 1071182 ECH
Lja1g1036 1 10311846 10313991 Lja6g0056 6 1069411 1071182 PCT