Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0052 ATGGCAGATCCTGCTAATATTGAACAAGCATTCTTTGCTTTGAAAAAGGGCACTCAGTTTATTAAGTATAGTCGAAAAGGGAAGCCAAAATTTTGTACATTCAGGCTCTCAAGGGATGAAACAACACTGATTTGGATTTCTCATGGTAAGGAAAAGAATTTGAAGTTGTCTTCCGTTTTACGCATCGTCTCAGGACAGAGAACAGCTGTCTTTAAAAGATATTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAGAACGGGGAACGATCACTTGATCTGATCTGCAAGGACAAAGATGAGGTAGAGGTATGGCTTACAGGCCTTAAGGCATTAATTTCTACTGGAGAGCGTAGCAGGCAACACACTAGAAGCGATTTAACGGATGATAGTGTTGACTTTGCTCTGAATGATCATCCTTTTGGTGGTGGAACACTAGATTTTACTTCAAGCAATCCCCAGGAGAGGTCTTCTTTGGATTCAGGCTCTCGAGAATCTTCAGTGTATTTTGCAAGATCAGATGTGGGGTCAGAATATGCAAATATGCCAATAAGGACAAGTGTTGGAGATGGTTCCCGCGTCAGTGTGTCGAGCATTGGCCACGCAAGTATAGCATCAGGACCAGATGACATAGAATCTCTAGGTGACGTTTTTATATGGGGAGAGGTTTGGGCAGATGGCACTTCATCTGATGGGTCAGGGAGTCAAGTCCCTTCTAAGATAGATGTGCTGACTCCTAAGCCATTAGAGTCTAATGTTGTTCTTGATGTTCATCAGATTGGGCCTGGTGTAAGGCACATTGCTCTAGTTACTAGACAAGGAGAGGTTTTCACCTGGGGAGAAGACTCTGGGGGAACACTTGGTCATGGGCTTGATAAAGATTTTGGTCAACCTCATCTTGTGGAGTCCCTTGCAGTTACTAATGTTGGTTTTGTTTCATGTGGCGAGTATCATACATGTGCTGTTTCTTCATCTGGTGATTTATTCACCTGGGGTGATGGCACACATAATGCTGGACTTCTCGGCCATGGCACCGATGCTAGCCACTGGATACCGAAGAGGGTCGCTGGCCCTTTAGAGCGACTTCAGGTTGTATCTATATCATGTGGCACATGGCATTCAGCATTTGCAACATTGAATGGTAAGCTTTATACCTTTGGTGATGGAATATTTGGTGTCTTGGGCCATGGAGATCGAGAGAGCGTGTCGTACCCAAAGGAGGTACAGCTATTGAGTGGACAGAGGGCTATGAAGGTGGCGTGTGGAGTGTGGCACACAGCTGCAATTATAGAGGTTACGGATCAATCAGGTTCTTCATCCAGGAAGCTCTTTACTTGGGGTGATGGTGACCAATATCGTTTGGGTCATGTTAACAAAGAAATCTACCTTCAACCAACTTGTGTAGCTGCACTTTCTGAGTATAGTTTTCAGCAGATTGCATGTGGACACACTATGACTGTGGCACTGACTGCATCTGGTCATGTTTTTACTATGGGAGGCACAATGTATGGTCAACTAGGGAACCCAATGTCTGATGGAAAAGTGCCGAATCTAGTCCGAGATAAGTTAGTAGGCGAGTTTGTTGAGGAAATATCTTGCGGAACACATCATGTTGCGGTATTGACTTCAAGAAGCGAACTATATACTTGGGGGAGAGGTGCTAATGGAAGATTGGGACATGGAGACACAGAAGATCAGAAAACTCCAACTTTGGTTGAAGCTTTGAAAGAGAGACATGTAAAGAATATCTCATGTGGATCAAGTTTTACTACTTGTATATGCATCCACAAATGGGTTTCTGGAGCTGACCAATCTGTTTGCTCTGACTGTCGACAACCGTTTGGTTTTACTAGAAAAAGGCATAACTGCTATAATTGTGGGTTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCGTTGAAAGCAGCATTGGCTCCAACACCTAGCAAACCGCATCGCGTGTGTGATTCTTGTTATGTTAAGCTTAAAGGTTCTGAGAGTGGTAATGCTTCCAATTTTAATAGAGAAATTACTCGTCCTTCCAGTTCCGCATATGGAAGGGAAAAATTTGAGCGGGGAGAGGTAAGGCCTTCGAGAATTCTCTTGTCTCCTGTCACGGGGACAGCAAAATTCCTTGAGATAAGGAGCAGTAAGCATGGAAGTGCACATGACTCTCCTTCCATATTCCGAGCTGCTCAAGTTCCTTTCCGTTTACATTTGAAAGATGTTGTATTTCCAGGTTCGTCGAATTCCATGCAAAATGCTTCCAAGTCTTCTACACAGCCAAGTCAACATCCAATTCCACCTGCACCAGCTTTAAGACCAACATCACCATACTCAAAAAGACCACCGAGCCCGCCTCGTTCTATTTCCCCTGGATTTTCAAGAAGCCTCATTGACAATTTAAAGAAGAAAAATGACAATTTGAATCAAGAAGTGTCCAAGTTGCAAAACCAAATTAATCGCTTGAAGAAAAAGAGTGACATGCAAGATATGAAGATTCAAGAGCTTCAGAAAAATATTGAGGAAGCCACCTCATTTGCTGGAGAGGAATCTTATAAGCATAGCGAAGCCAAGTCATTTATTAAGTCCATCGCAGATCAGTTGAGAGAAGTGGCCGCGAAGTTTCCACCTGAGATTCCTGAGAGTGAAACCTTGAAAGCTGTGCATGCTCAAGCTGAAGATTTCCTTAGGGGAAAATTAGAATTGGAATCTTGCGCGTCTAGCTTTGAGTCTGAGCCACAAAATGCAGCTGATATACCTGCCTCGGATAGCAAGCCTTTGAGCCTGCAAGAGCAAAGAGTGGAGGAAAATGATGAAGCTTCTTCTGGGGTAGTGCCATCTATGGATGGAGGAAATGTTCTTCAAGAAAGTAACAGCTTTGGATCTGCCAATGGAGTGAGTCCACCGAGTGCGGATATTAGTTCGAGATCAGCCGACTCTTATAATACGCCTGCGAATGAAGGAGAAAGAGAAACAACAGTCATTGAACAATTTGAACGTGGTGTTTATCTCACACTCATAGTACTACCTGGTGGTATCAAAATCTTCAAGCGAGTTAGATTCAGTAGGCGAAGATTCAGTGAGCAACAGGCAGAAGAATGGTGGATCCATAACAAAGATAGGGTGCTTAGTAAATACAATCCAGCAGCTATAATGAATGCAATTACAGGGTCACCTATCAGCCCACCTCAAGATGAAGAGAATGTTGAGGCATTAGCTTCTTCCTAA 3240 0.4333 MADPANIEQAFFALKKGTQFIKYSRKGKPKFCTFRLSRDETTLIWISHGKEKNLKLSSVLRIVSGQRTAVFKRYLRPEKDYLSFSLIYKNGERSLDLICKDKDEVEVWLTGLKALISTGERSRQHTRSDLTDDSVDFALNDHPFGGGTLDFTSSNPQERSSLDSGSRESSVYFARSDVGSEYANMPIRTSVGDGSRVSVSSIGHASIASGPDDIESLGDVFIWGEVWADGTSSDGSGSQVPSKIDVLTPKPLESNVVLDVHQIGPGVRHIALVTRQGEVFTWGEDSGGTLGHGLDKDFGQPHLVESLAVTNVGFVSCGEYHTCAVSSSGDLFTWGDGTHNAGLLGHGTDASHWIPKRVAGPLERLQVVSISCGTWHSAFATLNGKLYTFGDGIFGVLGHGDRESVSYPKEVQLLSGQRAMKVACGVWHTAAIIEVTDQSGSSSRKLFTWGDGDQYRLGHVNKEIYLQPTCVAALSEYSFQQIACGHTMTVALTASGHVFTMGGTMYGQLGNPMSDGKVPNLVRDKLVGEFVEEISCGTHHVAVLTSRSELYTWGRGANGRLGHGDTEDQKTPTLVEALKERHVKNISCGSSFTTCICIHKWVSGADQSVCSDCRQPFGFTRKRHNCYNCGLVYCHPCSSKKALKAALAPTPSKPHRVCDSCYVKLKGSESGNASNFNREITRPSSSAYGREKFERGEVRPSRILLSPVTGTAKFLEIRSSKHGSAHDSPSIFRAAQVPFRLHLKDVVFPGSSNSMQNASKSSTQPSQHPIPPAPALRPTSPYSKRPPSPPRSISPGFSRSLIDNLKKKNDNLNQEVSKLQNQINRLKKKSDMQDMKIQELQKNIEEATSFAGEESYKHSEAKSFIKSIADQLREVAAKFPPEIPESETLKAVHAQAEDFLRGKLELESCASSFESEPQNAADIPASDSKPLSLQEQRVEENDEASSGVVPSMDGGNVLQESNSFGSANGVSPPSADISSRSADSYNTPANEGERETTVIEQFERGVYLTLIVLPGGIKIFKRVRFSRRRFSEQQAEEWWIHNKDRVLSKYNPAAIMNAITGSPISPPQDEENVEALASS* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0052 1079 Pfam Pleckstrin homology domain 8 116 IPR001849 -
Lja6g0052 1079 SUPERFAMILY PH domain-like 7 116 - -
Lja6g0052 1079 ProSiteProfiles BRX domain profile. 996 1051 IPR013591 -
Lja6g0052 1079 SUPERFAMILY RCC1/BLIP-II 218 601 IPR009091 -
Lja6g0052 1079 MobiDBLite consensus disorder prediction 911 993 - -
Lja6g0052 1079 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 604 666 IPR017455 -
Lja6g0052 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 383 IPR000408 -
Lja6g0052 1079 Gene3D - 438 612 IPR009091 -
Lja6g0052 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 496 547 IPR000408 -
Lja6g0052 1079 MobiDBLite consensus disorder prediction 750 798 - -
Lja6g0052 1079 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 10 1058 - -
Lja6g0052 1079 SUPERFAMILY FYVE/PHD zinc finger 600 669 IPR011011 -
Lja6g0052 1079 CDD FYVE_like_SF 610 662 - -
Lja6g0052 1079 SMART fyve_4 598 667 IPR000306 GO:0046872
Lja6g0052 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 548 599 IPR000408 -
Lja6g0052 1079 Pfam Transcription factor BRX N-terminal domain 853 887 IPR027988 -
Lja6g0052 1079 Pfam Transcription factor regulating root and shoot growth via Pin3 997 1050 IPR013591 -
Lja6g0052 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 277 328 IPR000408 -
Lja6g0052 1079 Pfam FYVE zinc finger 600 665 IPR000306 GO:0046872
Lja6g0052 1079 Gene3D - 6 126 IPR011993 -
Lja6g0052 1079 ProSiteProfiles PH domain profile. 84 117 IPR001849 -
Lja6g0052 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 383 432 IPR000408 -
Lja6g0052 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 446 492 IPR000408 -
Lja6g0052 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 495 544 IPR000408 -
Lja6g0052 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 328 379 IPR000408 -
Lja6g0052 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 277 325 IPR000408 -
Lja6g0052 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 549 596 IPR000408 -
Lja6g0052 1079 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Lja6g0052 1079 MobiDBLite consensus disorder prediction 767 793 - -
Lja6g0052 1079 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 1058 - -
Lja6g0052 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Lja6g0052 1079 Coils Coil 802 843 - -
Lja6g0052 1079 MobiDBLite consensus disorder prediction 147 168 - -
Lja6g0052 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 671 IPR013083 -
Lja6g0052 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 435 IPR000408 -
Lja6g0052 1079 MobiDBLite consensus disorder prediction 750 766 - -
Lja6g0052 1079 MobiDBLite consensus disorder prediction 955 993 - -
Lja6g0052 1079 CDD PH_PLC_plant-like 5 117 - -
Lja6g0052 1079 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Lja6g0052 1079 PRINTS Chromosome condensation regulator RCC1 signature 386 400 IPR000408 -
Lja6g0052 1079 PRINTS Chromosome condensation regulator RCC1 signature 279 295 IPR000408 -
Lja6g0052 1079 PRINTS Chromosome condensation regulator RCC1 signature 485 503 IPR000408 -
Lja6g0052 1079 PRINTS Chromosome condensation regulator RCC1 signature 543 564 IPR000408 -
Lja6g0052 1079 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Lja6g0052 1079 Gene3D - 183 437 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0052 Lja-Chr6 990443 996281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0052 904 1051 Major Intrinsic Protein MIP AT1G31880 26.087 1.73e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0052 6 990443 996281 Lja6g0052 6 990443 996281 ECH