Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0046 ATGGAAAGTACAAGGCGCTGGTTTAGTAAGTTTAAGGCGATGGATAAAACGAAGCCTTCGAAGAATAAGGAAGATACAGGCATGGCAAAAGAAGGGCTGCAACCCCCAACAAACGAAGAAACCCCCTCAAATGTAACCCAACAGAAGGTTGAAGCTGCAAAGCAGTACATAGAGAATCATTATAAGAAGCAGATGCAGAGCCTGCAGGAGAGAAAAGAAAGACGCAATATGCTAGAAAAAAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAACAACTTGCTTAAGTATTTGGAGAAGAAGGAGACAGAATACATGCGCCTTCAGAGACATAAGATGGGGGCCGATGACTTTGAGCCCCTGACTATGATTGGAAAGGGTGCATTTGGAGAGGTTAGAGTCTGCCGAGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGGAACTTACTTGCAGAAGTTGACAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGAAGAGAATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACGTTGCTGATGCGGAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTACTGCTAGATAGACATGGGCACATGAAATTATCGGATTTTGGATTATGCAAACCACTAGACTGCAGTAATCTGCAGGAGAAGGACTTCTCTGCTATGAGCAACAGAAGTGGGGCCCTTCAAAGTGATGGACGTCCTGCAGCTCCTAAACGAACACAACAGGAGCAACTGCAGCATTGGCAAAAAAATCGACGAATGCTTGCTTATTCTACGGTTGGAACACCAGATTATATTGCTCCAGAAGTTCTGCTGAAGAAAGGATATGGCGTGGAATGTGACTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTCGGGTATCCGCCCTTTTATTCAGATGAACCAATGCAAACTTGTAGAAAGATTGTGAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCTAAACTGTCACCAGAGGCTAAGGACCTTATTTGTAGACTCCTGTGTAATGTGGAGCAGAGGCTGGGAACTAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCGATGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCGGACAAGCAAACTGAACCTTCTGCTAAGGCAGGGCCGTGGAGAAAGATGCTTCCATCTAAAGATATTAACTTCGTTGGCTATACATATAAGAATTTTGAAATCGTGAATGAGAATGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAATCTAAAAGGCCATCTATTAAGGCCCTATTTGATGACGAATCGGCTATGGCTGCCAATCAACCTGTCAAAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAGAAAAATGAATCACAATGA 1644 0.4179 MESTRRWFSKFKAMDKTKPSKNKEDTGMAKEGLQPPTNEETPSNVTQQKVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQNNLLKYLEKKETEYMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEENLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRHGHMKLSDFGLCKPLDCSNLQEKDFSAMSNRSGALQSDGRPAAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMQTCRKIVNWRTHLKFPEEAKLSPEAKDLICRLLCNVEQRLGTKGADEIKAHPWFDGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEADKQTEPSAKAGPWRKMLPSKDINFVGYTYKNFEIVNENEIPGIAELKKKSTKSKRPSIKALFDDESAMAANQPVKGSFLNLLPPQMEVPEKNESQ* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0046 547 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja6g0046 547 MobiDBLite consensus disorder prediction 1 47 - -
Lja6g0046 547 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0046 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 521 - -
Lja6g0046 547 Gene3D Phosphorylase Kinase; domain 1 437 447 - -
Lja6g0046 547 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja6g0046 547 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0046 547 Gene3D Transferase(Phosphotransferase) domain 1 203 269 - -
Lja6g0046 547 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 42 521 - -
Lja6g0046 547 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0046 547 MobiDBLite consensus disorder prediction 1 28 - -
Lja6g0046 547 Gene3D Phosphorylase Kinase; domain 1 117 202 - -
Lja6g0046 547 SUPERFAMILY Protein kinase-like (PK-like) 93 459 IPR011009 -
Lja6g0046 547 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lja6g0046 547 Gene3D Transferase(Phosphotransferase) domain 1 317 436 - -
Lja6g0046 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lja6g0046 547 CDD STKc_NDR_like 117 482 - -
Lja6g0046 547 Coils Coil 61 95 - -
Lja6g0046 547 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0046 Lja-Chr6 860691 880235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0046 1 541 AGC Kinase Gene Family AT4G14350 82.440 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lja6g0046 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0046 K08790 - gmx:100795087 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0046 6 860691 880235 Lja6g0046 6 860691 880235 ECH
Lja1g1018 1 10107303 10116266 Lja6g0046 6 860691 880235 PCT