Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0045 ATGGATCACATTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGGAGTGGATCTTTTGGGGAGCTTTATTTGGGTGTTAATGTGCAAAGTGGGGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCTCTATGAATCAAAATTGTATATGCTTCTTCAAGGAGGAACCGGGATACCTCATTTAAAATGGTCTGGAGTTGAAGGTGACTACAATGTCATGGCTATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGAAAACTCACTCTGAAAACTGTTTTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTATATGCATTCCCGGGGCTTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTGGGTCGCAAGGCGAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAGAATCTTACCGGAACTGCTCGATATGCAAGTGTTAACACACACCTTGGAGTTGAGCAAAGCAGAAGAGATGATCTAGAATCGCTTGGTTATGTGCTAATGTACTTTTTAAGAGGAAGTCTTCCATGGCAAGGCCTGAGAGCTGGCACTAAAAAGCAGAAATATGACAAAATAAGTGAAAAAAAGATGCTTACTTCGATAGAGGCCTTATGCAAGTCACATCCAGCAGAGTTCACGACTTACTTCCAATATTGCCGATCATTGCAGTTTGAAGATAAACCTGATTATTCATATCTTAAGAGGCTCTTTCGGGACCTATTCATTAGAGAAGGTTATCAGTTTGACTATATATTTGATTGGACTATGTTGAAGTATCCTCAAATTGGATCCAGTTCAAGAGCTCGATTTCAACAGCCAAGTGGGAAACCAGTCTTAAACCCTGGACCATCTGGAGAGAGATTAGAACGGCCTTCAGTTGGAAAAGAGATTCGGGATAGATTATCAGGCGCAGTGGAGGCATTTTCAAGAAAGAATAGCTCTGGGCATGGACTGCATAAAGATCACTCCATGCATAGGTCTTCAGATGATGTTCCATCTTCCAAAGTTGTGCAACTGGATTCTCACAGGGCTCGTAGTTCTTCTCAAAATGGCAGTGCCTCAAGACGGCCTGTCGTATCAAGCAGCAGACCAAGCTCGTCTGCTGAGCCTAACGAAAGTCGTTCCAGTCGAATGGTCTCTAGTAGTGGTCGTCTATCTACCACTCAGAGGGTTCAACCTCGTTCCGAGTCTAAATCATCATTTGCACGTGCCGCAAGGACGAGAGGTGGTCATGATGATGCACTCAGGAGCTTTGAGCTCCTGTCAATTGGTGCAGGGAAAAGGAAAATGTGA 1401 0.4276 MDHIIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLESVKTKHPQLLYESKLYMLLQGGTGIPHLKWSGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGTKKQKYDKISEKKMLTSIEALCKSHPAEFTTYFQYCRSLQFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQIGSSSRARFQQPSGKPVLNPGPSGERLERPSVGKEIRDRLSGAVEAFSRKNSSGHGLHKDHSMHRSSDDVPSSKVVQLDSHRARSSSQNGSASRRPVVSSSRPSSSAEPNESRSSRMVSSSGRLSTTQRVQPRSESKSSFARAARTRGGHDDALRSFELLSIGAGKRKM* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0045 466 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 451 - -
Lja6g0045 466 Pfam Protein kinase domain 10 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0045 466 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0045 466 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
Lja6g0045 466 PANTHER CASEIN KINASE-RELATED 1 451 - -
Lja6g0045 466 MobiDBLite consensus disorder prediction 345 451 - -
Lja6g0045 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lja6g0045 466 MobiDBLite consensus disorder prediction 366 438 - -
Lja6g0045 466 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0045 466 MobiDBLite consensus disorder prediction 349 365 - -
Lja6g0045 466 MobiDBLite consensus disorder prediction 302 332 - -
Lja6g0045 466 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lja6g0045 466 CDD STKc_CK1_delta_epsilon 8 282 - -
Lja6g0045 466 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0045 Lja-Chr6 840084 847947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0045 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 6.68e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lja6g0045 Pkinase 1.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0045 K08960 - mnt:21404312 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0045 6 840084 847947 Lja6g0045 6 840084 847947 ECH