Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0041 ATGGCTCTGGAACTTGTTGCTGGACCTCTAATGGAAGCTGTTTTCAGTGTGTTGCTTGAAAGGATAGCTTCTTCTGAAATTTTCAACTTCTTTAAGAAGAACAAAAGTGACAAGTTCCTCAAAAGGATGAAGATCATCTTGTTGTCAGTCCATGCTGTGCTCAATGATGCTGAGGAAAAGAAAATTAGAAATGAAGCAGTGAAGGAGTGGCTTGAGGAGCTTAAAGATGTAGCCTTTGATGCTGATGACTTACTTGATGAGATCTACACTGTTGAGAAAGTCAAGGAAAAAGAGGTAAATACAATCCACCCCACTACTTCAAATTTATGTGGTAAGGATCTTGAACAAAAGTTACAAGATATTGTTGAAAGATTAGAGTTTATTATAAACCAGAAAGAAGTACTTGATCTGAAGGTGGGTAAGGAAGTGAAAATGGCACACAAGACACCAACCTCATCATTGGTAGAAGAATGTGATGTGTATGGAAGGGATAATGATAAAGAAATCTTAGTTAACTTGCTATTGACAAATGATGCTAATGATGAAAAATTAGGTGTCATTCCCATTGTTGGGATGGGGGGAATTGGGAAAACCACCTTAGCTCAAGTAGTATACAATGATCATAGAATACAGAAGGAATTTGATCTCGAAGCATGGATTTATGTCTCTGAAGAATTTGATATCTGCAAGATCACAAAGAACCTTTTGGAGGTTGTCACATCATGTAAATGTGATATTGAAGATTTAAATTCACTCCAGAGGAATCTCAAAATGCACTTGTTGAAGAAAAAGTTTTTATTTGTGTTGGATGATGTTTGGAATGAAAATTATGATAATTGGGACAAATTCAGGACTCCATTTAAACATGCAGGAGCTCATGGAAGTAAGATTATTGTAACTACACGAAGCGGGCATGTTGCATCCATCATGCAAACTCTTCCACCTTATTATCTCAGTGAATTGTCCTATGAATACTGTTGGGATTTGTTTTCAAAGCATGCTTTTGATTATGGGGATTCAAATGTCCATCAAAGTGTGGAAAAAGTTGGAAGAGAAATAGTTAGGAAGTGCAATGGATTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGAGGTCAAAAAGTGAAAGGCAAGAGTGGCATAAAGTGTTGAACAGTGAGATATGGGATCTGCAAGATCATGAGAGCAGTATCCTTCCAGCTTTGAGATTAAGTTACCATTATCTCCCTTCTCATTTAAAGCGATGTTTTGCTTATTGCGCGATTTTCCCAAAAGACTACGAATTCGCAAAGGAGAACCTAATTTTGCTGTGGATGGCAGAAGGTTTGCTCCAACAATCAAAAAGACATGGAAGAATTGAAGAAGCTGGGAACGAGTATTTCTGTGAATTAGTATCAAGATCATTTTTCCAGCAATCAAGACGCGACAAGTCATGTTACCTAATGCATCATCTTGTAAATGACTTGGCTCAATATGTGTCTGGGGCATTTTCTGTCCGAATAGAAGGTAACAATTCTAATCAAGTTGAAGAAAGAACTCGCCATTTGTCTCATGTTATTTCACATAGTTCCTCATATGTAAACCTGAAAGATGTTTCCAAAGCAAATCGACTCCACACCTTTCTGCAAATAAGAACAATAGGTACTTCTATCGACATGTTCAACGACATGCCAAATGATCTGTTGACAAAGTTAAGGTGCTTAAGGGAGTTATCTTTGGTAGGTGCATATTTTTATAGTTTACCTGATTCAATAGGTGAACTTAAACATCTGCGCTATCTCGAAGTTTCTGACACTGAGATCATGAGGTTACCTGAATCAATCTGCAGCTTGCACAATTTACAAACTCTGAAGTTAGTTGGATGTTACAAGCTCAGCGAACTGCCAACAGACATTCACAAGCTTGTCAACTTGCGCTATCTTGATATCAGAGACACATGTTTGAAGTGGATGCCATTGCAAATCAGTGAGTTAAAAAACCTCCAAGGGTTGAGTGACTTTTTTGTTGGAGATGATTATGGATCTTCAATTGGTGAGCTGGGAGAGTTATCTACTTTACATGGTACCTTGTCCATTCATTACATAGAACATGTTGCTAATTCTAAGGAATCCGAGAAGGCAAAGTTGAAGGAAAAGCATGGCCTTGAAATGCTATCCTTAGATTGGGGTGGGTGTGGTGATACTGATGACTCTCAGCATGAAAAAACCATACTAGATAGCCTGCTACCTCATACTAATTTGAAGAAACTTGCTATCTATGACTATCCAGGCACAGAGTTTTCAGATTGGTTGGGGGATTACTCCTATTGCAACTTGGTGTTCTTGCAGCTCAAGGGCTGTAAATATTGCTACAAATTGCCTCCACTTGGACAACTTCCAATGTTGAAAGAGCTTCAGATTATTAAATTTGAAGGGCTAGTGAATGTGGGGTCTGAGTTTTATGGAAACAGAACTTGTGCAACGGAAAGCTTTCCAGCACTGGAAATTCTAAGGATTGAGTCTATGACAGCATTGGAGAAATGGTGTTCTGGTGCTGACATGGCAGGTAGCAGAGCATTTTCTCATCTTAGAGAGTTTTACATTGAAGGGTGTCCCAAACTGAGAGGGGATTTACCAAGAAACCTTCCATCTTTGACATTACTTGTAATCAGAGATTGCAAGCGTTTGCTTTGTTCACTTCCCAGATCCCCAGCTTTGCGGGTGCTGAACATTCAAAATTGTGAGAAGCTAGAATTCCCCATGCATGAAACTTGGTACCACCAATCACTGACATCTTTGTTCCTACTTGATAGTTGTGACTCACTCATGTTATTGCCTTTGGATCTCTTCCCCAACCTCAAGTCTCTAGATATTTGGAGATGTAAGAATCTGGAAGCACTTACTGTTTCTGCATCAGATTCAGATGCAACTCCTCCAAATTTGAAGTCCCTCCATTCCCTTTGCATAAGGCATTGTCCAAAATTCTTATCATTTCCTAAAGGAGGATTTGCAGCTCCAAATCTGACTTTATTAACCATAAGCTACTGTGAGAGGTTGAATTCTCTTCCTGAAAAAATGAATGAGCTCATGCCAAGCTTGAAAGAACTTCAACTGCGGGGCTGTCCACAGATTGAGTCATCTACTATGAGGCCACTCAGGATTCGGATTTGCAACAAACTTATGGAAGGGAAACAAAACCACTCTGATCCTCTCTTTGCTAGGTTGGAGGGTCTGGCCTCTATTCATAGTCCCTCATCAAGTTAA 3243 0.3925 MALELVAGPLMEAVFSVLLERIASSEIFNFFKKNKSDKFLKRMKIILLSVHAVLNDAEEKKIRNEAVKEWLEELKDVAFDADDLLDEIYTVEKVKEKEVNTIHPTTSNLCGKDLEQKLQDIVERLEFIINQKEVLDLKVGKEVKMAHKTPTSSLVEECDVYGRDNDKEILVNLLLTNDANDEKLGVIPIVGMGGIGKTTLAQVVYNDHRIQKEFDLEAWIYVSEEFDICKITKNLLEVVTSCKCDIEDLNSLQRNLKMHLLKKKFLFVLDDVWNENYDNWDKFRTPFKHAGAHGSKIIVTTRSGHVASIMQTLPPYYLSELSYEYCWDLFSKHAFDYGDSNVHQSVEKVGREIVRKCNGLPLAVKTLAGLLRSKSERQEWHKVLNSEIWDLQDHESSILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFAKENLILLWMAEGLLQQSKRHGRIEEAGNEYFCELVSRSFFQQSRRDKSCYLMHHLVNDLAQYVSGAFSVRIEGNNSNQVEERTRHLSHVISHSSSYVNLKDVSKANRLHTFLQIRTIGTSIDMFNDMPNDLLTKLRCLRELSLVGAYFYSLPDSIGELKHLRYLEVSDTEIMRLPESICSLHNLQTLKLVGCYKLSELPTDIHKLVNLRYLDIRDTCLKWMPLQISELKNLQGLSDFFVGDDYGSSIGELGELSTLHGTLSIHYIEHVANSKESEKAKLKEKHGLEMLSLDWGGCGDTDDSQHEKTILDSLLPHTNLKKLAIYDYPGTEFSDWLGDYSYCNLVFLQLKGCKYCYKLPPLGQLPMLKELQIIKFEGLVNVGSEFYGNRTCATESFPALEILRIESMTALEKWCSGADMAGSRAFSHLREFYIEGCPKLRGDLPRNLPSLTLLVIRDCKRLLCSLPRSPALRVLNIQNCEKLEFPMHETWYHQSLTSLFLLDSCDSLMLLPLDLFPNLKSLDIWRCKNLEALTVSASDSDATPPNLKSLHSLCIRHCPKFLSFPKGGFAAPNLTLLTISYCERLNSLPEKMNELMPSLKELQLRGCPQIESSTMRPLRIRICNKLMEGKQNHSDPLFARLEGLASIHSPSSS* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0041 1080 CDD RX-CC_like 47 88 IPR038005 -
Lja6g0041 1080 Gene3D Ribonuclease Inhibitor 524 895 IPR032675 -
Lja6g0041 1080 SUPERFAMILY L domain-like 482 888 - -
Lja6g0041 1080 Pfam Rx N-terminal domain 11 96 IPR041118 -
Lja6g0041 1080 Gene3D - 405 492 IPR036388 -
Lja6g0041 1080 Coils Coil 111 131 - -
Lja6g0041 1080 PRINTS Disease resistance protein signature 873 889 - -
Lja6g0041 1080 PRINTS Disease resistance protein signature 186 201 - -
Lja6g0041 1080 PRINTS Disease resistance protein signature 357 371 - -
Lja6g0041 1080 PRINTS Disease resistance protein signature 259 273 - -
Lja6g0041 1080 Gene3D - 320 404 IPR042197 -
Lja6g0041 1080 Gene3D Ribonuclease Inhibitor 955 1050 IPR032675 -
Lja6g0041 1080 Pfam NB-ARC domain 171 386 IPR002182 GO:0043531
Lja6g0041 1080 Gene3D - 141 313 IPR027417 -
Lja6g0041 1080 PANTHER OS05G0414200 PROTEIN 26 875 - -
Lja6g0041 1080 SUPERFAMILY RNI-like 844 1040 - -
Lja6g0041 1080 PANTHER DISEASE RESISTANCE PROTEIN RP 26 875 IPR044974 GO:0006952
Lja6g0041 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 420 IPR027417 -
Lja6g0041 1080 Gene3D - 11 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0041 Lja-Chr6 802084 805521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0041 568 664 WRKY Transcription Factor Family AT4G12020 34.694 2.48e-07 53.1