Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0030 ATGGCCAATGGCTTTTGTAACTCGAGCCATGAAGGGTCGAACTCTGCACAACATCCACCTCACAATAACACAAGCCAAAATCCATGCACACTTTGCAATAGGGTTTTCCCAAGCACTCAAGCCCTCATAACCCATGTTGACTCCCACATTGAGCATGAAGAGGGTGCCATAAGAAGGCTCTATTCACACCAAAACATCAATGATGGTTGGTTTTTCCAATCACAACCATCGCCACCACAACCTATGGCCATGACGCCTCAGCCAAGAAGGAACCCATTTTTCAGTCCTGGTAGCCAAGTTGATTCTTCACTGTCGGTAATTAGGCAAATGCAACTTCCACCACAACTTCATGTTCTTTCACCAGCAAGGATTCATCAATCTCAATATGATGGCACTAAAGCATATATCACGCAGCTCGAGAAGCCCATCAAGAAGATCGATTTCATTGATTTGGTTAACATTGATGACGATGACGATTCTGAGGCGCAACCATTGGATTTGACACTCAAGCTCTAG 516 0.4477 MANGFCNSSHEGSNSAQHPPHNNTSQNPCTLCNRVFPSTQALITHVDSHIEHEEGAIRRLYSHQNINDGWFFQSQPSPPQPMAMTPQPRRNPFFSPGSQVDSSLSVIRQMQLPPQLHVLSPARIHQSQYDGTKAYITQLEKPIKKIDFIDLVNIDDDDDSEAQPLDLTLKL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0030 171 MobiDBLite consensus disorder prediction 1 24 - -
Lja6g0030 171 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Lja6g0030 171 Pfam C2H2-type zinc finger 29 49 - -
Lja6g0030 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0030 Lja-Chr6 660219 660734 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g0030 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0030 K23196 - lja:Lj2g3v1643270.1 196.438