Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0023 ATGAGTCGCGAACCCACCTCTGCTAGGGTTCCAAACTCTGTTGGCGGCGGATCTCCCTCCAAGGACGATACCCAAGCAGAAGGCGACGGAGATGGCGGCGAGACGACGAGCGACGGAGACGGTTCTGACTGGAGGAAGAAAAACGGCTTTCTCCTGGGTGGAGAAAAAGCTAAAGTCGTTTCCATCCAGGTTCGAAGGGAGGAGAAAGTAGCTGCGTGCAGCGGCTTCTCGAGGAGCGACGACGTCGGCTTGGAGAAGGAGAATAACCTCCACTGTAGTTCGATCTTCACCCTTTTCGTTGATGGCATTTCTGACGGCGTCAATTATCTCCAGGTTCGTGGGCTATTTGCTCAGATTGGGAGGGTCTTGAATGTCTTTATCCAGAGACAGAGGAAGATTGGGAGAAGCCATAGGTTCGGGTTTGCTAGATTCTCTTCTTTGGAGGTTGCTTCTCAGGCGATTAACCTCCTCGATGGGTTTCGTCTGGGAGGAACGCCATTGTCGGTTGCTTGGGCGAGATTTCCGCGGCGTGGAGTTGCTGGTTCGAGGGTGTTTGCGGCTAGAGATCAGAGATCGTCGGAGCATGCTGGGGTTCTTGCTGGAATCGGGGAAGTGGGGAATCGGCATCTGTTGTCTTCTTCTGAGAGTGAAGAATTGATGATTTCTGGCCTCTTTAGAGGCGGCTCGCCATCCCCAAGCTTCTCAACTTCTGTGCTTTTCCCAGAAACCTCTTCTGCGGATGTTAGGGGTATTGAGGCAGTGGAGCTTTCTGCGGATGCTAGGGGCTTTGAGACGGTGGAGGGGGAAGACGTGATGCTGACGTCCTTGGGTATTCTATGTGATGTACTCATAGCTGCCTCTTGCTGTTCTTTACCTGGTAGCACATCTAATATGCAACACTGCTTCTCTGGACTCAAAGCTCAAACTCGTTCTCATCTGCAATCTCATTTCACTTCAGAGGTAAATAATACCGTGGGGCCAACAGCTCAAAGAGGAGTTGCTCTGTTATTTTCTGCTCCTGCGCTTGCATTTTCAAGGTGGTGTCAAAGGAAACCACAAGAACTTCCCCTGATGTGCTGGTGA 1083 0.5162 MSREPTSARVPNSVGGGSPSKDDTQAEGDGDGGETTSDGDGSDWRKKNGFLLGGEKAKVVSIQVRREEKVAACSGFSRSDDVGLEKENNLHCSSIFTLFVDGISDGVNYLQVRGLFAQIGRVLNVFIQRQRKIGRSHRFGFARFSSLEVASQAINLLDGFRLGGTPLSVAWARFPRRGVAGSRVFAARDQRSSEHAGVLAGIGEVGNRHLLSSSESEELMISGLFRGGSPSPSFSTSVLFPETSSADVRGIEAVELSADARGFETVEGEDVMLTSLGILCDVLIAASCCSLPGSTSNMQHCFSGLKAQTRSHLQSHFTSEVNNTVGPTAQRGVALLFSAPALAFSRWCQRKPQELPLMCW* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0023 360 SMART rrm1_1 97 170 IPR000504 GO:0003723
Lja6g0023 360 Gene3D - 77 206 IPR012677 -
Lja6g0023 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Lja6g0023 360 MobiDBLite consensus disorder prediction 1 20 - -
Lja6g0023 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Lja6g0023 360 MobiDBLite consensus disorder prediction 1 45 - -
Lja6g0023 360 SUPERFAMILY RNA-binding domain, RBD 94 180 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0023 Lja-Chr6 557627 567585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0023 96 173 Eukaryotic Initiation Factors Gene Family AT2G23350 34.615 6.32e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0023 - K13418 lja:Lj1g3v1036320.1 134.806