Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0022 ATGCCAGTTAGGCAGATGAAAGAGGGCTCAGAGCAGCACCTTGTGATCAAACCTCATTTGCTGAACCCCATGAATTCAGCTAGGAAGGTTACTAGGGCTGTCCAAAATGGCAAAGGTCCACCACCACCACCACAAGAACCCAATAATCAAACTTCACCTCAGGAAAGGGCAAAGGGAAGAAGAAAGAGCAGAGTTTGCAGGAAATCTGATCAAGGAGGTGTTTTGATGAGACCCTGCACTGTTGTGACAAATACAGCAAATGGGCTTGTTGATAATGGCAGCATTTCTGGTGACATAGAAATGGGTTACCCTAGTTCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGGTTTGGACAAGTTGGGGCAAAATGCATTGTGAAAGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCACTATGATGTCGCTATTACACCGGAAGTGTCTTCCAAAATAGTAAACAGGTCCATTATAGCAGAACTTGTGAGGCTTTACAAAGAGTCTGAGCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGGCACTTCCTTTTTCCCGGAGAGAGTTTAAGATTAAGCTTATAGACGTAGACGATGGAGTTAATCCCACCAAAAGGGAAAGAGAATACTGTGTCGTGATCAAGTTTGTTGCGCGGGTTAATTTGCATCACTTGGGGCAGTTTCTAGCTGGCAAGCGTGCCGATGCGCCACAGGAGGCACTCCAAACTCTAGACATTGTTCTAAGAGAGTTATCATCTAAAAGCTGCATTTTCGAAAGGTTTTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTTGGGCAAGGATTGGAATCTTGGTGCGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGTCTTTCCCTCAATATAGATATGGCTTCTGCTGCGTTCATTGAACCTCTCCCAGTAGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTTCTGTCAAGGCAATTGTCTGATGCTGATCGCATTAAGGTTAAGAAAGCCCTGAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGCTTTAGAAGAAAGTATCGTGTTTCTGGTTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGACGGGAACTCAACCATGAAGTCGGTAGTTGATTACTTCCAAGAAATGTATGGTTTCATTATTAAATATACCCACCTTCCTTGCCTGCAAGTGGGAAGTCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTGGAGGGTCAACGTTATACTAAAAGGTTGAATGAGAAGCAAATTACTGCTCTCCTGAAAGTTACTTGCCAAAGACCCCGTGATCGAGAAAATGACATTTTGCAGACGATTCAGCATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATCAGTGAAAAACTAGCTTCTGTGGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAGTATCACGATAGTGGGAAAGAAAAGAATTGTTTACCTCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATCAATGGAATGGCCGTTAGCCGGTGGGCATGCATAAATTTTTCACGAAGTGTGCAAGATAATATTGCTCGCACTTTTTGTAATGAGCTTGGTCAAATGTGTCAAGTATCTGGGATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCAGGTAGAGAAAGCTTTGAAACATGTTTACCACGTATCAATGAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGCTCTCTCTATGGTGACCTCAAGCGTATTTGTGAAACTGAGCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTTAAGATTACTAAGCAGTACTTGGCTAATGTGTCTCTGAAGATCAATGTCAAGATGGGAGGTAGAAACACCGTTCTTGTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATCCCGAAAATGGAGAAGACTCTAGCCCTTCGATTGCAGCTGTAGTGGCGTCCCAAGACTGGCCTGAAGTAACAAAATATGCAGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTTATACAAGATTTGTACAAAACTTGGCATGACCCTGTTCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGATTTCTTTTAGAAAGGCAACAGGACAGAAGCCACAAAGGATTATATTTTACAGGGATGGTGTGAGTGAAGGGCAGTTTTACCAAGTTCTACTATATGAATTGGATGCGATTCGTAAGGCATGTGCTTCTTTAGAGCCAAACTATCAACCTCCAGTAACCTTCGTAATTGTACAAAAGAGACATCATACTCGGTTGTTTGCAAACAACCACAGGGACAGGAGCAGTACAGATAAGAGTGGGAATATATTGCCAGGAACTGTTGTTGATTCCAAAATCTGTCACCCAACAGAGTTTGATTTTTACCTCTGCAGTCATGCTGGCATTCAGGGAACAAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAATTTCACTGCTGATGGGATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCGAGGTGTACACGCTCTGTCTCTGTTGTTCCTCCAGCATATTATGCACACTTGGCCGCATTTCGAGCTCGTTTCTATGCGGGACCGGAAGAGCTGCAGGAGAATGGCTCCACAGGTACTGGACATGGTTCCAAGGTAACAAGAGCAGCTGGAGAGTGTGGTGTGAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTGATGTTTTATTGTTAA 2937 0.4293 MPVRQMKEGSEQHLVIKPHLLNPMNSARKVTRAVQNGKGPPPPPQEPNNQTSPQERAKGRRKSRVCRKSDQGGVLMRPCTVVTNTANGLVDNGSISGDIEMGYPSSSKSLSFAPRPGFGQVGAKCIVKANHFFAELPDKDLNHYDVAITPEVSSKIVNRSIIAELVRLYKESELGMRLPAYDGRKSLYTAGALPFSRREFKIKLIDVDDGVNPTKREREYCVVIKFVARVNLHHLGQFLAGKRADAPQEALQTLDIVLRELSSKSCIFERFCPIGRSFFSPDIRTPQRLGQGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKVKKALRGVKVEVTHRGSFRRKYRVSGLTSQPTRELVFPVDGNSTMKSVVDYFQEMYGFIIKYTHLPCLQVGSQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHDSGKEKNCLPQVGQWNMMNKKMINGMAVSRWACINFSRSVQDNIARTFCNELGQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSMNKTKGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGLVSGGMIRDLLISFRKATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVIVQKRHHTRLFANNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYAGPEELQENGSTGTGHGSKVTRAAGECGVKPLPALKENVKRVMFYC* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0022 978 Gene3D paz domain 318 443 - -
Lja6g0022 978 Gene3D - 503 676 - -
Lja6g0022 978 SUPERFAMILY Ribonuclease H-like 603 932 IPR012337 -
Lja6g0022 978 ProSiteProfiles PAZ domain profile. 325 439 IPR003100 GO:0005515
Lja6g0022 978 Pfam Mid domain of argonaute 522 599 IPR032473 -
Lja6g0022 978 PANTHER PROTEIN ARGONAUTE 10 57 977 - -
Lja6g0022 978 CDD PAZ_argonaute_like 324 438 - -
Lja6g0022 978 SMART DUF1785_2 272 324 IPR014811 -
Lja6g0022 978 MobiDBLite consensus disorder prediction 1 70 - -
Lja6g0022 978 SMART Piwi_a_2 613 933 IPR003165 GO:0003676
Lja6g0022 978 SUPERFAMILY PAZ domain 319 479 IPR036085 GO:0005515
Lja6g0022 978 SMART PAZ_2_a_3 329 461 IPR003100 GO:0005515
Lja6g0022 978 Pfam N-terminal domain of argonaute 124 258 IPR032474 -
Lja6g0022 978 Pfam Piwi domain 614 931 IPR003165 GO:0003676
Lja6g0022 978 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 977 - -
Lja6g0022 978 CDD Piwi_ago-like 483 932 IPR045246 -
Lja6g0022 978 ProSiteProfiles Piwi domain profile. 613 934 IPR003165 GO:0003676
Lja6g0022 978 Pfam Argonaute linker 2 domain 465 511 IPR032472 -
Lja6g0022 978 Pfam Argonaute linker 1 domain 273 322 IPR014811 -
Lja6g0022 978 Pfam PAZ domain 351 455 IPR003100 GO:0005515
Lja6g0022 978 Gene3D - 682 978 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0022 Lja-Chr6 541871 550472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0022 1 978 Eukaryotic Initiation Factors Gene Family AT5G43810 79.561 0.0 1623
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0022 6 541871 550472 Lja6g0022 6 541871 550472 ECH