Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0013 ATGGAACGGCGGCAACCGTCCACCTCGCCGCCGCGCATCATTCTGGGGAAGTACCAGCTCACGCGGTTCCTGGGGCGCGGTAATTTCGCAAAGGTGTACCAAGCGGTGTCTCTCACGGACGGCACCACGGTGGCCGTCAAGATGATCGACAAGTCCAAGACGGTGGACGCCTCCATGGAGCCGCGGATCGTGCGAGAAATTGACGCCATGCGACGCCTCCAGCACCACCCGAACATCCTCAAAATCCACGAGGTCATGGCCACCAGGACCAAGATCTACCTCATCGTCGACTACGCCGGCGGAGGAGAGCTCTTCTCCAAGATCTCCCGCCGAGGCCGCCTCCCGGAGCCCCTCGCCCGCCGCTACTTCCAGCAGCTCGTCTCCGCCCTCTGTTTCTGCCACCGAAACGGCGTCGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTGGACGCCGAGGGAAACCTCAAGGTCTCTGACTTCGGCCTCTCCGCGCTGCCGGAGCAGCTCAGCAACGGCCTGCTCCAGACTGCCTGCGGAACTCCGGCGTACACCGCGCCGGAGATCCTCCGTCATGTCAGGTACGATGGGTCCGTGGCCGACGCCTGGTCCTGCGGGGTCATCCTGTACGTCTTACTCGCCGGCTACCTCCCGTTTGACGACTCCAACCTCGCGGCGATGTGCAAGAGGATCAGCCGCCGCGATTACCAGTTCCCGGCGTGGGTATCGAAGGCGGCGCGGCACCTGATACACCAACTCCTGGACCCGAACCCGAAGACCAGAATGCGGTTGGAGAGGGTGTTGGAGAACGCGTGGTACAAGAAATCGCTGAGAGCGGAACCGGAAGAGAGCGTGTTCGAGTCGGATTTGTACAACAAGTGGTGCAGTTGTGGCGGCGAGGGTTACAAGAACTTGGGGATGAACGCGTTTTACATAATATCAATGTCTTCAGGGCTGGACTTGAGGGGGTTGTTCGAAACGGCGTCGTCGGGGAAGAGAGAGAAGAGGTTCACGTCGGAGAAGGAGGTTGGGGTAGTGGAGGAGAAGGTGAAGGAGGTTGGTGTGAGTTTAGGGTTTAGGGTTGAGATTGGGAAGAATGGAGCAATTGGGTTGGGGAAGGGGAAAGTGGGTGTGGTGGTTGAGGTTTTTCAGATTGCATCTCAATTGTTGTTGGTGTCTCTCAAATTGGTGGATGGTGGTTTGGAGTTTGATTGGACTGATTGGGAAAATGGTCTTCAAGATGTTGTTCTCTCTTTCTTAGCATAA 1266 0.5845 MERRQPSTSPPRIILGKYQLTRFLGRGNFAKVYQAVSLTDGTTVAVKMIDKSKTVDASMEPRIVREIDAMRRLQHHPNILKIHEVMATRTKIYLIVDYAGGGELFSKISRRGRLPEPLARRYFQQLVSALCFCHRNGVAHRDLKPQNLLLDAEGNLKVSDFGLSALPEQLSNGLLQTACGTPAYTAPEILRHVRYDGSVADAWSCGVILYVLLAGYLPFDDSNLAAMCKRISRRDYQFPAWVSKAARHLIHQLLDPNPKTRMRLERVLENAWYKKSLRAEPEESVFESDLYNKWCSCGGEGYKNLGMNAFYIISMSSGLDLRGLFETASSGKREKRFTSEKEVGVVEEKVKEVGVSLGFRVEIGKNGAIGLGKGKVGVVVEVFQIASQLLLVSLKLVDGGLEFDWTDWENGLQDVVLSFLA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0013 421 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Lja6g0013 421 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0013 421 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 11 419 - -
Lja6g0013 421 Pfam NAF domain 307 362 IPR004041 GO:0007165
Lja6g0013 421 Gene3D Transferase(Phosphotransferase) domain 1 11 299 - -
Lja6g0013 421 SUPERFAMILY Protein kinase-like (PK-like) 14 280 IPR011009 -
Lja6g0013 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lja6g0013 421 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lja6g0013 421 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0013 421 SMART serkin_6 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0013 421 Gene3D Kinase associated domain 1, KA1 305 417 - -
Lja6g0013 421 PANTHER SERINE/THREONINE KINASE 11 419 - -
Lja6g0013 421 CDD CIPK_C 308 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0013 Lja-Chr6 385244 386883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0013 6 419 Miscellaneous Gene Families AT3G23000 56.635 1.05e-162 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja6g0013 Pkinase 2.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0013 K12761 - gmx:100305372 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0013 6 385244 386883 Lja6g0013 6 385244 386883 ECH