Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0007 ATGACAAGTTGCAATCCTCCTCCTCTTCCTCATCATCATCACTGGTGTTGTTGTGTTCTCTCACTGCTGCTGTCACTCCTCCTCCTTCACTTCCCTGTGCTTGATGCTCAGACACCGAGACAAGTAAACAACACAGGCTTCAGCTGCAGCAAGAGCAGCAGCAACTACCCATGTTCAGCCTATGCTTTCTACCGTGCCAATTCCCCCAACTTCCTCGACCTCGCCACCATCGGCGACCTCTTCTCCGTCAGCCGCCTCATGATCGCTAAACCCAGCAACATCTCCTCCCCTTCCTCATCTTTACTCCCCGACCAACCCCTCTTTGTTCCATTGTCCTGCTCCTGCAACTCCGTCAACACCACCTTCGGCTCCATCTCCTACGCCAACATCTCCTACACCATCAAACCCAACGACACCTTCTTCATCGTCTCCTCCACCCACTTTCAGAACCTCACCACCTACCCTTCTGTCGAGGTCGTCAACCCCACCCTCCTCCCTACCAACCTCCAAATCGGTGACAACGTTGTCTTCCCTGTTTTCTGCAAGTGCCCCAACAAAACCATATCCAATTACATGATCTCCTACGTTGTTCAACCCTCTGACAACATCTCTTCCATTGCTTCAAGATTCGGAGCACGGGAACAGTCCATAATCGATGCGAACGGTGGTGGTGATGACGCTCTTCATGTTTATGACACCATTTTTATCCCGGTGACTCGGTTGCCCGTTCTGTCGCAGCCCACGGCGGTTGCTCCCTCTGCTCCTCCTCCTCCGCCTCCTCCTCGAACTGATACTGTTAGAGGGTTGGCGGTTGGGTTGGGAATTACAGGGTTGTTGTTGATTTTGGTGAGTGGGTTGTGGGTCTGCTTGTGGGTGGGGAGGAGAGATGAGGGAAAACAGAAGAAGCAGGGGAATTTGTATTTGGGAGGAGGAGGAGGAAGAGGGAAAGAGAGTATGGCGGATGCCAAGTTGATTGCTAGTGTGTCTGATTGCTTGGACAAGTACAGGGTTTTTGGGATTGAGGAGCTGATGGAGGCCACTGGTGGGTTTAGTGAAAATTGTTTGATTCAGGGGTCTGTTTACAGAGGATCCATTGATGGGGAGATCTATGCAATCAAGAAGATGAGGTGGAATGCTTATGATGAGCTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTGGTGAAGCTGGAGGGATTTTGCACAGACCCAGAAGAATCAAATTGCTTTCTAGTCTACGAATACGTGGAGAATGGATCTCTCTACTCCTGGCTGCACCAGGACTGCAGGAATGAAAAGCTGAGCTGGAAAACAAGGCTGCGAATCGCCATCGACATTGCCAACGGCCTCCAATACATCCACGAGCACACGAGGCCTCGCGTGGTACACAAAGACATAAAGAGCAGCAACATTCTGTTGGACGCCAACATGAGAGCCAAGATTGCAAATTTCGGGCTCGCGAAATCAGGAATGAATGCAATCACAATGCACATTGTGGGGACACAGGGCTACATAGCCCCTGAGTATCTCGCTGATGGTGTGGTCTCGACGAAGATGGACGTGTTCTCTTTCGGAGTCGTGTTGCTTGAACTGGTTTCTGGGAAGGAAGCCATTGATGAGGAGGGGAATCTGCTGTGGGCAAGTGCAATTAGAACGTTTGAAGTGGGTAATGAGGTAGAGAAGGGTAGAAGATTGAGGGAATGGTTGGATAAGGGTGTGTTAAGAGAGACATGCTCAATGGAAAGTTTGATGGGGGTTGTTGCGGTTGCAATTGCTTGTTTGCATAGAGACCCAACAAAGAGGCCCAGCATAGTGGATATTGTGTATGCACTCAGTAAAAGTGAAGATATTGGCTTTGATGTCTCAGATGAAGGTATAGGTTCGCCACGGGTGATGGCAAGGTGA 1905 0.5008 MTSCNPPPLPHHHHWCCCVLSLLLSLLLLHFPVLDAQTPRQVNNTGFSCSKSSSNYPCSAYAFYRANSPNFLDLATIGDLFSVSRLMIAKPSNISSPSSSLLPDQPLFVPLSCSCNSVNTTFGSISYANISYTIKPNDTFFIVSSTHFQNLTTYPSVEVVNPTLLPTNLQIGDNVVFPVFCKCPNKTISNYMISYVVQPSDNISSIASRFGAREQSIIDANGGGDDALHVYDTIFIPVTRLPVLSQPTAVAPSAPPPPPPPRTDTVRGLAVGLGITGLLLILVSGLWVCLWVGRRDEGKQKKQGNLYLGGGGGRGKESMADAKLIASVSDCLDKYRVFGIEELMEATGGFSENCLIQGSVYRGSIDGEIYAIKKMRWNAYDELKILQKVNHGNLVKLEGFCTDPEESNCFLVYEYVENGSLYSWLHQDCRNEKLSWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDANMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELVSGKEAIDEEGNLLWASAIRTFEVGNEVEKGRRLREWLDKGVLRETCSMESLMGVVAVAIACLHRDPTKRPSIVDIVYALSKSEDIGFDVSDEGIGSPRVMAR* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0007 634 ProSiteProfiles Protein kinase domain profile. 341 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0007 634 SUPERFAMILY LysM domain 193 238 IPR036779 -
Lja6g0007 634 Gene3D Transferase(Phosphotransferase) domain 1 416 622 - -
Lja6g0007 634 ProSiteProfiles LysM domain profile. 193 236 IPR018392 -
Lja6g0007 634 Gene3D LysM domain 192 237 IPR036779 -
Lja6g0007 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Lja6g0007 634 SUPERFAMILY Protein kinase-like (PK-like) 335 611 IPR011009 -
Lja6g0007 634 Pfam Protein kinase domain 359 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0007 634 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 20 631 - -
Lja6g0007 634 Gene3D Phosphorylase Kinase; domain 1 322 415 - -
Lja6g0007 634 PANTHER - 20 631 - -
Lja6g0007 634 SMART serkin_6 339 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0007 634 Pfam LysM domain 195 237 IPR018392 -
Lja6g0007 634 CDD LysM 193 236 IPR018392 -
Lja6g0007 634 SMART LysM_2 131 178 IPR018392 -
Lja6g0007 634 SMART LysM_2 194 237 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0007 Lja-Chr6 291935 295294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0007 46 613 Receptor kinase-like Gene Family AT2G23770 34.057 7.36e-85 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja6g0007 Pkinase 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0007 - - lang:109352405 836.254