Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0002 ATGGAAACAGCGCCTGCTTGCTTCTTCTGCAAATTGGGTGTTGCTGGTTCTACTTTCAAGCCCTTTTCTTCATTCTGCGGTCGCCTATTACCACGTAATAATGTCAATACCATCATCTCCATGTGCTCTTTGTCCTCTTCACTCGGAACCTGGCTTATTCGAAACGCCACTAACAGTAGTGAAAGTTCACTTAAGCTTCCCAGCTTCGCCAGAAGAAGACAAAGAAGAAGCCGGTTCATTCAGAAGCAGTTACCCTTGGTAGTGGAGGAACAGCAGCAGCATCAGCAAATCCAACAACAACCCTATGGCTATCAAAATGGAGATCCAATTGGGTGGAAAGATCTTGGCAAGAGCGTGGTTAGGTGGATTCGCCAAAGCATGAGGGCTATGGCATCTGATTTTGCTTCCGCCGAGTTACAGGGTGATTTGGAGTTCTCTGAGCTGAGACAGCGCATGGGACCGGGTCTCACTTTTGTTATCGAGGCTCAGCCGTACCTGAATGCGATTCCTATGCCCCTTGGCCTTGAAGTCATGTGCTTGAAAGCCAGCACCCACTATCCCACCTTGTTCGACCACTTTCAGAGGGAGCTACGTGATGTTCTCCAACATCTGCAGACTAAATTCTTGGTCCACGATTGGCGTCACACTGAGTCCTGGAAACTGCTTAAGGAGCTTGCCAATTCAGCTCAGCATAAGGAAGTTGCCAGAAAGATAACGATGCCCAAGACTGTCCAAGGTGTTTTAGGAATGGACATAAGAAAGGTCAGAGCAGTACAGCACAGGATTGATGAATTCGCCAATCTTATGTCAGGACTACTCCATATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTAGATGCTGTTCCTAGACCTGATGCTACTTCGGATTCATCGAAACCGATTGAATTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGTAATTTAAACGCCATCAGTACCTCTAAAGGATTGGGGGGAATGCATTTGGTGTTATTCAAAGTTGAAGGGAACCACCGCTTGCCGCCTACTACTCTTTCTCCAGGAGACATGGTTTGTGTGAGAACGTGTGACAGCAGGGGTACAGTTACAACATCTTGCATGCAAGGATTTGTTCATAGTCTTGGGGATGATGGCTATAGTGTAACTGTTGCTTTGGAGTCACGCCACGGTGATCCTACATTCTCTAAACTATTTGGAAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTAACTATGAGCGCAACTGTGAAGCCCTAATGCTGCTCCAGAAGAATGGATTGCGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACACTCTTTGGAGATGGTGAAGATGTTGCATGGCTTGAAAAGAATGATTTGGCTGACTGGGCAGAAGAAAGTTTGAATGGAATATTAGGAAGTGAAACCTTTGATAATTCTCAGCAGAGAACAATTGCACTGGGTTTGAATAAGAGGAGGCCAGTATTGGTTATCCAAGGGCCTCCTGGTTCAGGCAAGAGTGGTTTGCTCAAGCAGCTTATAGTATGTGCTGTTAGACAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCGAGTGTTGGCTTAAATATTGTGCGGGTTGGAAATCCGGCTTGTACATCAAAAACAGTGGGATCAAAATCTTTGGGAGAAATCGTAAATGCAAAACTTGCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGGAAAGATCTAAGACATTGTTTAAAGGATGATTCATTAGCTGCAGGCATACGGCAACTTTTGAAACAGCTGGGGAGGTCTCTGAAGAAAAAGGAAAAGCAGACCATGGATGAAGTTATGTCTAGTGCTCAGGTTGTGCTTGCCACCAATACTGGAGCAGCTGATCCTTTGATCCGAAGGCTAGATGCTTTTGACTTGGTTGTAATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTACAGGGAAACCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAAGCCCTAGAAGGTGGTCTAGGAATATCTCTACTTGAGAGAGCTACAACATTGCATGAGGGTATTCTCACCACCAGGTTAACAACACAATACCGTATGAACAATGCAATTGCTAGCTGGGCTTCAAAGGAGATGTATGGAGGCTTGTTGAAGTCCTCTAAGACTGTGTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTCAGCCTACATGGATAACACAGTGCCCACTGCTATTGCTTGATACTAGAATGCCATATGAAAGTCTGTCTGTTGGTTGTGGAGAGCATCTTGACCCAGCTGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGACATCGTATTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCAACTGCTATTGTAGTGCAATCCCCTTATGTTGCTCAAGTACAACTTTTGAGGGACATGCTTGATGAGTTTCCAGAAGCTGCAGGTACCGAGGTTTCCACGATTGATAGCTTTCAAGGTCGGGAAGCTGATGTTGTAATCTTATCCATGGTGCGATCAAACACTTTGGGAGCTGTTGGATTTCTGGGGGACAGCAGAAGAATCAATGTTGCCGTTACAAGAGCCCGCAAACATTTGGCAGTGGTTTGTGACAGCTCAACTATATGCCACAATACCTTCCTAGCAAGACTTATGCGTCACATAAGACGCTTTGGCAGGATTAAGCATGTAGAACCAGGTAATTTTGGAGGGTATGGTCTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2880 0.4455 METAPACFFCKLGVAGSTFKPFSSFCGRLLPRNNVNTIISMCSLSSSLGTWLIRNATNSSESSLKLPSFARRRQRRSRFIQKQLPLVVEEQQQHQQIQQQPYGYQNGDPIGWKDLGKSVVRWIRQSMRAMASDFASAELQGDLEFSELRQRMGPGLTFVIEAQPYLNAIPMPLGLEVMCLKASTHYPTLFDHFQRELRDVLQHLQTKFLVHDWRHTESWKLLKELANSAQHKEVARKITMPKTVQGVLGMDIRKVRAVQHRIDEFANLMSGLLHIERDAELEFTQEELDAVPRPDATSDSSKPIEFLVSHSQPQQELCDTICNLNAISTSKGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDSRGTVTTSCMQGFVHSLGDDGYSVTVALESRHGDPTFSKLFGKNVRIDRIQGLADTLNYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNDLADWAEESLNGILGSETFDNSQQRTIALGLNKRRPVLVIQGPPGSGKSGLLKQLIVCAVRQGERVLVTAPTNAAVDNMVEKLSSVGLNIVRVGNPACTSKTVGSKSLGEIVNAKLASFREEYERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGRSLKKKEKQTMDEVMSSAQVVLATNTGAADPLIRRLDAFDLVVIDEAGQAIEPSCWIPILQGNRCILAGDQCQLAPVILSRKALEGGLGISLLERATTLHEGILTTRLTTQYRMNNAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVQPTWITQCPLLLLDTRMPYESLSVGCGEHLDPAGTGSFYNEGEADIVLQHVFSLIYAGVSPTAIVVQSPYVAQVQLLRDMLDEFPEAAGTEVSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTICHNTFLARLMRHIRRFGRIKHVEPGNFGGYGLGMNPILPSIN* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0002 959 Gene3D - 313 419 - -
Lja6g0002 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 922 IPR027417 -
Lja6g0002 959 Pfam AAA domain 711 914 IPR041679 -
Lja6g0002 959 Coils Coil 586 606 - -
Lja6g0002 959 CDD SF1_C_Upf1 735 931 IPR041679 -
Lja6g0002 959 SMART ultradead3 481 733 IPR014001 -
Lja6g0002 959 Gene3D - 420 717 IPR027417 -
Lja6g0002 959 SMART AAA_5 500 715 IPR003593 -
Lja6g0002 959 Pfam AAA domain 485 701 IPR041677 GO:0004386
Lja6g0002 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 86 959 - -
Lja6g0002 959 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 86 959 - -
Lja6g0002 959 Gene3D - 733 941 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0002 Lja-Chr6 21217 28652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0002 471 674 Core DNA Replication Machinery Family AT1G08840 26.442 3.28e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0002 - - aip:107625008 1522.29