Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3357 ATGGCGGATCAATGCTCCAATGAGGGCTCCACTAGTGCCAATACTTCAGCACAGAGTTCGGACTCAACTGTTCAGCTTAATATCAAGACTCTAGATTCCCGCATCTTCAGTTTTCAAGTGGACAATAATATGCCCGTTTCATCGTTCAAAGAGAAAATTGCTAATGAAATTGGTGTTCCAGTTAGTCAGCAACGCCTGATTTTTAGAGGAAAAGTGTTAAAGGATGAGCATGTCCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAATCAGTCACAGGCGTCTGGTACGAGATCTGCTGAGCCAACTGGCACAAATGGTAACAGAGGGAATGATACAGGCTCAGGGGCTCCTCGTAATCGTGTTGGGCAAATATCACACAGTGTTGTTCTTGGGACTTTTAATGTGGGGGAACAAGGTGAAGGCATTGTTCAAGACCTAACCCGGGTTATTGGGACAGTTTTGAATACTATTGCAAATGGTGGCCAGAGCACAGTTAATGTTCCTAATGCTACACAAACTTCTTCAGCTCCACCGGGGAATGAAACTGAAGGAGTGCATGCTGTAAGACAAAACCTAGCAGGAAATCAGGCACCGTCTGGACAGACATTTCCTGGTCTGGCATTCCAATCTATGCCTCAAGTTGTTCAGATTCCTATGGCTGCAGGAGCCATACCCCTTCCTTCTCTCAATTCACCAATTCCTGATTCATTGAACACACTGTCTGAGTTTATAAATAGCATGCAACAGGCACTATCACAAAATGGTTATCGGCCAAATCTTTCTTCGACTAACCTTGCAGATCAAAGAGTGGAATTGCCTTCCAATGCACAGGGATTGCCAACACTTGAAGCATTAAGCACTGTATTGCATCGTGCAGAACAGTTGCTTGGTAGTCAAGCTGTTGCTGCACTATCTCATATTGCTGGACGCCTAGAGCAAGAGGGGACTTCTACCGATCTGGGTATGAGGGGTCAAATACAGTCAGAGTCAATGCAGATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGTCGAACAATGTTGACACTGCGTATGGGACAGTCTTATGCAGAATCAGTTGTGAATGCTGGACCAGCAGTTTATATTTCTCCATCAGGGCCAAATCCTATAATGGTGCAGCCCTTTCCACTTCAGACAAGCTCCCTTTTTGGCGGTCCTGCTCCATCTTCAACTCCTGCATCTTTAGGTACCATTGGTATTGGAAGTGCTCCTAGGAATGTAAACATTCACATACATGCTGGTACCTCTCTGGCACCAATTGTTTCAGCAATCGGTTCTAGGCCAAATAATGGGGAAGGGACAAGAAGTGAACACCGTAATGAGCCCGGCTCTGGTGATTCAGGTTCAACACGGGTATTACCTGTTCGAAATGCTGTATCAGCGACTCTCCCATCACACACTCCTGGTGTTGGAATTGCTGGTAGCACGCAAACTGGATCTGGTGTTTCTACTTCACAGCCACCTCATGATTCAGCTCCTTTTTCATCTGTTTTAGCTGAAATCCATTCTCGCCTTAGGAACTCTGTTGGTAATATGCAAGGAAATAACACAGTTCCGTCAGGACAAATGGAATCAAGTAATAGGGACTTGTCTTCTGGGCCTGAATCAAGACCTCCGCTGGGAAATGAACAGCAAGATACCATGGAGAATGGCTGTGAGGCTGCCAGTGCATCCTCAGTTGGTGGCACTTCTGAAACTGGAGTGGAGAAGCCCCAAACCGAGGCAACCCAAACCTATAATAATGAAGAGAGAGATGTTTTGGTTGACAAATTCGTTTCAAGCAGCTCTTCCAATCAAGATTTACCAAGTTGTTCTAGTGGAGAAACAATAGTAAAATCAGAAAAAGTACAGGATGCTCCATCAGTAATCGAAAGACGAGATGGAACTGAACCTGCCAAAGCTGCTCCACTAGGATTGGGTGTGGGTGGTTTGGAGCGTAAGAGGCGAACTAGACCTCTATCTCCTTTAGGTAAAGGTGCTGATGATGGATCATCTGGTTCTTCCATCAATCAAAGTCAGCAGACCAGAACAGATGGTCAACATTTATTGCAAACTCTAGCTAGTCATGGATCTGCTGTGAATTTGAGAAATGCTAATAGAACATCCCAGCAGCCCTTGCCCTCCAGTAGTAGCCAGGTTGATGTGGCTGGTTTAATGTCTCAGCTTTTGCATAGCCCTGCTTTGAATGGTTTGTTGGAAGGAGTTTCACAACAAACAGGAGTTGACTCACCTGATGGATTGAGGAATACGTTGCAGCAGTTCACGCAGAGCCCACAGATGATGAATACAGTCAATCAGATTGTCCAACAGGTTGGCAGTCAGGATATGGGGAGAAATATGTTTGCTGGAATGGAGAGAGGGCAGGGTGGCGGTATTGACTTGTCAAGTATGTTCCAACAGATGATGCCTATTGTATCTCGAGCGCTTGGTGGGGGTAATCCTCCCTCGTTATTCTCTGCTACAGAGCCAGAACCTGGTGCACCCTACAGAGATGAAAGTTCTGATAATCGAAGCATACAGCTTGACCTTCAATCAGTAGCTGAGAGGATTGATCGCCTGAATCCACCTAGTGATGTTTTCCGTGCTGTAGCTGAAAATGCTGTCGAGCTTTCTGGCAGTGGAAGTGCTTCTAGTGATCTTCTGGATGAGTTATGCAGCAATGAGAGCCTAGCTAGGGAATATGTGGACATGTTGCGATATGATGTAAATCAGCTGCTCGAGGGACAATCTGAGTCGGACAAGTCCTAA 2808 0.4555 MADQCSNEGSTSANTSAQSSDSTVQLNIKTLDSRIFSFQVDNNMPVSSFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQASGTRSAEPTGTNGNRGNDTGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVQDLTRVIGTVLNTIANGGQSTVNVPNATQTSSAPPGNETEGVHAVRQNLAGNQAPSGQTFPGLAFQSMPQVVQIPMAAGAIPLPSLNSPIPDSLNTLSEFINSMQQALSQNGYRPNLSSTNLADQRVELPSNAQGLPTLEALSTVLHRAEQLLGSQAVAALSHIAGRLEQEGTSTDLGMRGQIQSESMQIGLAMQHLGALLLELGRTMLTLRMGQSYAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPAPSSTPASLGTIGIGSAPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGTRSEHRNEPGSGDSGSTRVLPVRNAVSATLPSHTPGVGIAGSTQTGSGVSTSQPPHDSAPFSSVLAEIHSRLRNSVGNMQGNNTVPSGQMESSNRDLSSGPESRPPLGNEQQDTMENGCEAASASSVGGTSETGVEKPQTEATQTYNNEERDVLVDKFVSSSSSNQDLPSCSSGETIVKSEKVQDAPSVIERRDGTEPAKAAPLGLGVGGLERKRRTRPLSPLGKGADDGSSGSSINQSQQTRTDGQHLLQTLASHGSAVNLRNANRTSQQPLPSSSSQVDVAGLMSQLLHSPALNGLLEGVSQQTGVDSPDGLRNTLQQFTQSPQMMNTVNQIVQQVGSQDMGRNMFAGMERGQGGGIDLSSMFQQMMPIVSRALGGGNPPSLFSATEPEPGAPYRDESSDNRSIQLDLQSVAERIDRLNPPSDVFRAVAENAVELSGSGSASSDLLDELCSNESLAREYVDMLRYDVNQLLEGQSESDKS* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3357 935 MobiDBLite consensus disorder prediction 681 698 - -
Lja5g3357 935 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Lja5g3357 935 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 6 933 - -
Lja5g3357 935 MobiDBLite consensus disorder prediction 528 698 - -
Lja5g3357 935 MobiDBLite consensus disorder prediction 528 602 - -
Lja5g3357 935 SMART ubq_7 24 95 IPR000626 GO:0005515
Lja5g3357 935 MobiDBLite consensus disorder prediction 91 129 - -
Lja5g3357 935 CDD Ubl_ubiquitin_like 26 93 - -
Lja5g3357 935 SUPERFAMILY Ubiquitin-like 13 98 IPR029071 -
Lja5g3357 935 MobiDBLite consensus disorder prediction 442 513 - -
Lja5g3357 935 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g3357 935 MobiDBLite consensus disorder prediction 170 193 - -
Lja5g3357 935 MobiDBLite consensus disorder prediction 610 632 - -
Lja5g3357 935 Gene3D - 11 108 - -
Lja5g3357 935 PANTHER OS07G0498800 PROTEIN 6 933 - -
Lja5g3357 935 MobiDBLite consensus disorder prediction 833 856 - -
Lja5g3357 935 MobiDBLite consensus disorder prediction 92 129 - -
Lja5g3357 935 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Lja5g3357 935 MobiDBLite consensus disorder prediction 170 189 - -
Lja5g3357 935 PRINTS Ubiquitin signature 55 75 IPR019956 -
Lja5g3357 935 PRINTS Ubiquitin signature 34 54 IPR019956 -
Lja5g3357 935 PRINTS Ubiquitin signature 76 97 IPR019956 -
Lja5g3357 935 MobiDBLite consensus disorder prediction 465 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3357 Lja-Chr5 65628327 65638696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3357 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.28e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3357 - - gmx:100811870 1389.4