Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3356 ATGGAGCTGAACAATATTGGAAGCGGCGTTGTGGTGTTGTTATGCTTTATCACATTCACCAGTACTCTTGCTGAAGATCCCTACAGGTTCTTCAGCTGGAATGTAACATACGGTGACATTTATCCACTTGGTGTTCGCCAGCAGGGAATACTTATCAATGGACAATTCCCAGGTCCAGATATTCATTCAGTTACCAATGACAACCTCATCATCAATGTCTTCAATAGCTTAGACGAGCCCTTTCTCCTCTCCTGGAATGGGGTCCAGCAGAGAAGGAACTCGTACGAAGATGGGGTATTCGGAACAACATGCCCAATCCCTCCGGGTAGGAACTTCACATACATACTTCAAGTGAAGGATCAAATTGGGAGCTTCTACTACTTCCCATCCCTTGCATTCCACAAAGCAGCTGGTGGTTTTGGAGGCATTAGGATCCTCAGCAGACCAAGAATTCCAGTCCCATTCGATGATCCCGCTGGTGATTACACTGTCCTTATTGGAGACTGGTACAAGTCCAACCACACGGATCTGAAGGCCCAACTTGATAGCGGCAAGAAGCTGCCATTCCCTGATGGAGTCCTCATCAATGGCCGTGGGTCTGGTGGAGCATCTTTAAATGTGGAACAAGGAAAGACTTACAGGCTGAGAATATCGAATGTGGGGTTGGAACATTCACTTAACTTCCGGATACAAAACCACAAAATGAAGCTGGTAGAAGTGGAAGGAACACACACCCTTCAGACTACCTATTCCTCCCTTGACGTTCACGTTGGGCAATCTTACTCGGTTCTAGTAACAGCTGATCAACCAGCTCAAGACTATTACATTGTGGTTTCCACACGATTCACCTCACCGGTGCTCACATCCACTGGAGTCCTTCGATATAGTAACTCTGCAGGCCAAGTTTCAGGTCCACCCCCTGGTGGACCTACCATCCAAGTTGACTGGTCCTTGAACCAAGCCCGCTCCATCAGGACTAACCTCACAGCAAGCGGACCGCGGCCAAACCCACAAGGATCCTACCATTATGGTATGATAAACACGACGAGAACCATCATACTCTCGAGTTCAGCTGGGCAAGTGAACGGCAAGCAAAGATACGCGATGAACAGTGTCTCTTATGTTTCCCCAGACACTCCTCTTAAGCTCGCTGACTACTTCAAAATCGATGGCGTTTTCCGTGTCGGAAGCATTTCCGACAGACCCACTGGCGGTGGCATGTATCTTGACACCTCTGTCCTGCAAACTGACTACAGAACATTTGTGGAGATTGTTTTCCAAAATGACGAAGACATCCTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTGGTTGGTCTGGATGGAGGACAGTGGACTCCTGATAGCAGAAACCAGTACAATCTTCGAGATGCAGTTTCGCGTTCCACCACTCAGGTATATCCCAAGTCATGGACTGCTATATATATTGCGCTTGACAATGTGGGCATGTGGAACTTGAGGTCTGAATTCTGGGCACGTCAATACCTTGGCCAACAGTTTTATATGCGTGTTTATACAACATCAACCTCAATCAGAGATGAATATCCTATTCCAAAGAATGCACTACTTTGTGGCAGGGCAAGTGGGAGACACACAAGACCCCTTTGA 1632 0.4724 MELNNIGSGVVVLLCFITFTSTLAEDPYRFFSWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGVQQRRNSYEDGVFGTTCPIPPGRNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFDDPAGDYTVLIGDWYKSNHTDLKAQLDSGKKLPFPDGVLINGRGSGGASLNVEQGKTYRLRISNVGLEHSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAQDYYIVVSTRFTSPVLTSTGVLRYSNSAGQVSGPPPGGPTIQVDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINTTRTIILSSSAGQVNGKQRYAMNSVSYVSPDTPLKLADYFKIDGVFRVGSISDRPTGGGMYLDTSVLQTDYRTFVEIVFQNDEDILQSYHLDGYSFFVVGLDGGQWTPDSRNQYNLRDAVSRSTTQVYPKSWTAIYIALDNVGMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPIPKNALLCGRASGRHTRPL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3356 543 Gene3D - 344 539 IPR008972 -
Lja5g3356 543 SUPERFAMILY Cupredoxins 345 534 IPR008972 -
Lja5g3356 543 Pfam Multicopper oxidase 161 297 IPR001117 -
Lja5g3356 543 Pfam Multicopper oxidase 35 148 IPR011707 GO:0005507
Lja5g3356 543 Gene3D - 28 149 IPR008972 -
Lja5g3356 543 SUPERFAMILY Cupredoxins 155 335 IPR008972 -
Lja5g3356 543 Gene3D - 159 334 IPR008972 -
Lja5g3356 543 Pfam Multicopper oxidase 379 515 IPR011706 GO:0005507|GO:0016491
Lja5g3356 543 SUPERFAMILY Cupredoxins 23 175 IPR008972 -
Lja5g3356 543 PANTHER - 12 536 - -
Lja5g3356 543 CDD CuRO_3_AAO_like_1 377 497 IPR034275 GO:0005507
Lja5g3356 543 CDD CuRO_1_AAO_like_1 30 145 IPR034273 GO:0005507
Lja5g3356 543 PANTHER MULTI-COPPER OXIDASE 12 536 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3356 Lja-Chr5 65620210 65626748 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3356 - - gmx:100812416 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3356 5 65620210 65626748 Lja5g3356 5 65620210 65626748 ECH
Lja5g3356 5 65620210 65626748 Lja1g3457 1 43058427 43066056 PCT