Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3353 ATGGGCAACACCGCCAGCCAGGAAGAGCAACGCCAAACTGATCAAAAAACTCAAAGAACCCCCCCAAGTGATCAAACAACTCAAACAAATGATCTCGGTACAGTCTTACGAGATGGAAAAGAAATACTTTTTCAGGCATTCAACTGGGAGTCTCACAAGTACAATTGGTGGGCGAATTTAGAAAGCAAAATTCCTGACATAGCTAGAGCTGGATTTACTTCAGCATGGTTGCCGCCACCAACTCATTCCTTCTCACCTGAAGGTTACACTCCACAGAACCTTTCCTCTCTTAATAGTAAATATGGTTCTGAGTATCAGTTAAAAGCTTTACTTCAAAAGATGAAGAACTGCAAAGTCAGAGCAATGGCTGACATTGTTATCAATCATCGTGTTGGTACCACCCAAGGTCGTGGAGGGATGTATAATCGCTTTGATGGAATTCCATTAGCGTGGGATGAACATGCTGTGACATCATCTACTGGTGGACTGGTAGCATATTCGTTACTCCGTCCATTTCTTTTTAACTGTCCAAAAAGAGAAAAAAAACACACATATTATGAATTCCAATCTCAATCTTACATTCATGATCCTGTTGCATCTATGCATTGTTTATTTCAGGGTAAGCCAGACACGGGGGCCATTTTCCAAGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAGAAAGGACATCATAGGATGGCTCCGATGGCTACGTTATAACATAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAAAGGGTTTTCACCAAAATATGTGAAAGAATACATCGAAGAAGCAAAGCCATTGTTCTCTGTTGGGGAGTACTGGGATTCTTGCAACTACAAGGGTTCTGCTTTGGACTATAACCAAGATAGCCATAGGCAGCGAATAATCAATTGGATTGATGGCACTGGACAGCTTTCAACTGCATTCGACTTCACAACAAAGGGAATTCTTCAGGAAGCTGTCAAGGGACAGTTTTGGCGTCTGCGTGATCCTCAAGGGAAGCCACCTGGTGTGGTCGGGTGGTGGCCTTCAAGATCAGTCACATTTATAGATAATCATGACACCGGCTCAACTCAGGCTCATTGGCCCTTCCCCAAAGACCATATTATGGAGGGTTATGCATACATATTGACTCATCCTGGGACACCAACGGTTTTCTATGACCACTTTTATGACTGGGGCAACTCATTTCGTAATGAGATTGTCAAGTTGATTGACATTCGCAAGCGTCAAGGTATTCATAGTCGATCACCTATCAGGATTCTGGAGGCCAATGATAACCTATACTCTGCAATAATCGGGGAGAAAGTGTGTATGAAGATTGGAGATGGTTCATGGTGTCCATCTGGGAGGGAGTGGACACTATCAACCTGTGGCTACAATTATGCTGTGTGGCAAAAGTAG 1416 0.4294 MGNTASQEEQRQTDQKTQRTPPSDQTTQTNDLGTVLRDGKEILFQAFNWESHKYNWWANLESKIPDIARAGFTSAWLPPPTHSFSPEGYTPQNLSSLNSKYGSEYQLKALLQKMKNCKVRAMADIVINHRVGTTQGRGGMYNRFDGIPLAWDEHAVTSSTGGLVAYSLLRPFLFNCPKREKKHTYYEFQSQSYIHDPVASMHCLFQGKPDTGAIFQGFPNIDHTQDFVRKDIIGWLRWLRYNIGFQDFRFDFAKGFSPKYVKEYIEEAKPLFSVGEYWDSCNYKGSALDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGQFWRLRDPQGKPPGVVGWWPSRSVTFIDNHDTGSTQAHWPFPKDHIMEGYAYILTHPGTPTVFYDHFYDWGNSFRNEIVKLIDIRKRQGIHSRSPIRILEANDNLYSAIIGEKVCMKIGDGSWCPSGREWTLSTCGYNYAVWQK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3353 471 PIRSF Alpha-amylase_plant 182 471 IPR013775 GO:0004556|GO:0005509|GO:0005975
Lja5g3353 471 PIRSF Alpha-amylase_plant 17 164 IPR013775 GO:0004556|GO:0005509|GO:0005975
Lja5g3353 471 SMART aamy 41 424 IPR006047 GO:0005975
Lja5g3353 471 SMART alpha-amyl_c2 413 471 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lja5g3353 471 CDD AmyAc_arch_bac_plant_AmyA 42 423 - -
Lja5g3353 471 PANTHER ALPHA-AMYLASE 2-RELATED 206 471 - -
Lja5g3353 471 PANTHER ALPHA-AMYLASE 2-RELATED 36 163 - -
Lja5g3353 471 MobiDBLite consensus disorder prediction 1 33 - -
Lja5g3353 471 Gene3D Glycosidases 172 416 - -
Lja5g3353 471 Pfam Alpha-amylase C-terminal beta-sheet domain 414 470 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lja5g3353 471 Gene3D Glycosidases 26 166 - -
Lja5g3353 471 PANTHER ALPHA-AMYLASE 206 471 - -
Lja5g3353 471 PANTHER ALPHA-AMYLASE 36 163 - -
Lja5g3353 471 Gene3D - 417 471 IPR013780 -
Lja5g3353 471 SUPERFAMILY (Trans)glycosidases 48 404 IPR017853 -
Lja5g3353 471 SUPERFAMILY Glycosyl hydrolase domain 417 471 - -
Lja5g3353 471 Pfam Alpha amylase, catalytic domain 62 390 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3353 Lja-Chr5 65186769 65191737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3353 24 471 Glycoside Hydrolase AT1G76130 67.857 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3353 K01176 - gmx:100813490 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3353 5 65186769 65191737 Lja5g3353 5 65186769 65191737 ECH