Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3345 ATGCTGGACTCGGTGCTTCTGGCGCTTTTCTTGCCCTGTCTGGGCATGAGCGCCGTCTTCGTCGTCTACATGTGCCTCCTCTGGTATGCCACCACTCACCACCCACCGGAGACCAGGCTACGGGCTAAGCCCGTCTCCGACAAGGGCCTTTCCGCCTCCCAGCTCCAGAAACTTCCCAGTATCACCGGGAAAGACCTTCCCCTGGCCTCCGAATGCGCCGTGTGTCTCGATGAGATCGACAGCGATCAACCGGCACGTGTGCTTCCCGGTTGCAACCATGGGTTCCATTTGGAATGCGCTGACACTTGGCTCTCGAAACACCCTCTCTGCCCGGTTTGTAGAGCCAAACTGGATCTCTTCAGTAATCCCGCTGAAAATGAAAATCCATGTTGA 393 0.57 MLDSVLLALFLPCLGMSAVFVVYMCLLWYATTHHPPETRLRAKPVSDKGLSASQLQKLPSITGKDLPLASECAVCLDEIDSDQPARVLPGCNHGFHLECADTWLSKHPLCPVCRAKLDLFSNPAENENPC* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3345 130 SUPERFAMILY RING/U-box 71 120 - -
Lja5g3345 130 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Lja5g3345 130 SMART ring_2 72 113 IPR001841 -
Lja5g3345 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
Lja5g3345 130 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 130 - -
Lja5g3345 130 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 130 - -
Lja5g3345 130 Pfam Ring finger domain 71 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3345 Lja-Chr5 65130040 65131713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3345 1 130 C3H Transcription Factor Family AT5G42200 49.265 5.00e-43 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3345 K19037 - gmx:100817919 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3345 5 65130040 65131713 Lja5g3345 5 65130040 65131713 ECH
Lja5g3345 5 65130040 65131713 Lja1g3474 1 43360723 43361112 PCT