Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3342 ATGATCCTAATTCACTCTCATTATTTTGGATCTTCTCTTCACTTGGGTATTCACAACATAATGGCCAGAGTTATGTTTGTTTTGGCAAGCCTCATTGGATTATGCTGCTTCACAATCAATACCTATGCCTTCACTCCTTCTGGATGGACCAATGGCCATGCCACCTTTTATGGGGGTAGCGATGCCTCAGGAACAATGGGAGGAGCTTGTGGGTATGGGAATCTGTATTCAACAGGGTATGGGACTAGAACTGCAGCTTTGAGCACTGCCTTATTCAATGATGGAGCTTCATGTGGAGAGTGCTACAAAATCATATGTGACTATAAAACTGACGCCAGATGGTGCATAAAAGGAAGATCTATTACCATAACCGCCACGAACTTCTGCCCTCCCAATTTTGCTCTTCCCAACAACAACGGAGGATGGTGCAACCCACCTCTCAAGCATTTTGACATGGCTCAACCCGCATGGGAGAAGATTGGAATTTACAGAGGAGGAATAGTGCCTGTGTTGTTCCAAAGGGTTCCATGCAAAAAGCATGGAGGGGTGAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTTATGATCAGCAATGTGGCTGGTGCTGGATCCATCCAATCTGTGTCCATCAAAGGCTCCAAGACTGGGTGGCTGTCCATGTCAAGAAACTGGGGTGCAAATTGGCAATCCAATGCTTTCTTGAATGGCCAATCTTTGTCATTCAGGATCACAACCACTGATGGAGAAACCAGAGTCTTCCCAGATGTTGTTCCAGGAAACTGGGCTTTTGGCCAGACTTTCTCTAGCAAAGTCCAATTCTAA 828 0.4565 MILIHSHYFGSSLHLGIHNIMARVMFVLASLIGLCCFTINTYAFTPSGWTNGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIICDYKTDARWCIKGRSITITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVMISNVAGAGSIQSVSIKGSKTGWLSMSRNWGANWQSNAFLNGQSLSFRITTTDGETRVFPDVVPGNWAFGQTFSSKVQF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3342 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 182 IPR007112 -
Lja5g3342 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 271 IPR007117 -
Lja5g3342 275 SUPERFAMILY PHL pollen allergen 179 271 IPR036749 -
Lja5g3342 275 Gene3D - 182 275 IPR036749 -
Lja5g3342 275 Gene3D - 35 178 IPR036908 -
Lja5g3342 275 PANTHER EXPANSIN 29 275 - -
Lja5g3342 275 Pfam Lytic transglycolase 84 171 IPR009009 -
Lja5g3342 275 PRINTS Expansin signature 257 273 IPR002963 GO:0009664
Lja5g3342 275 PRINTS Expansin signature 228 249 IPR002963 GO:0009664
Lja5g3342 275 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Lja5g3342 275 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Lja5g3342 275 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Lja5g3342 275 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Lja5g3342 275 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Lja5g3342 275 PRINTS Expansin signature 108 119 IPR002963 GO:0009664
Lja5g3342 275 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Lja5g3342 275 SMART dpbb_1 84 172 IPR007112 -
Lja5g3342 275 SUPERFAMILY Barwin-like endoglucanases 48 200 IPR036908 -
Lja5g3342 275 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Lja5g3342 275 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Lja5g3342 275 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lja5g3342 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Lja5g3342 275 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Lja5g3342 275 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Lja5g3342 275 PANTHER EXPANSIN-A15 29 275 IPR002963 GO:0009664
Lja5g3342 275 Pfam Expansin C-terminal domain 183 260 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3342 Lja-Chr5 64893794 64895933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3342 84 275 Expansin Gene Family AT1G20190 82.292 1.41e-120 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3342 - - gmx:548040 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3342 5 64893794 64895933 Lja5g3342 5 64893794 64895933 ECH