Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3338 ATGATTACCGCTGCTAAATCTTCCTCCAATCATCACTCGCCAACCACTGCTCCGTCACCGGTGCCGTCTGGGCCGCGAAAAAACCTTCCCTCCCCGTGGGCTCAGGTCGTTCGCGGCGGCGACACGGACTTCACTGCCGCCGTCGGCATTCATGAATCGCCACCATCGTCATCGTCCTCTTCCTCGTCCCTTGCTACCGGCGCTGCTGAACAAGCGCCTGCCGCCTCTGAACCAGCGCAGTCATCATCCCCGAAGGTGGTTCCTGCCTCGCCGCCGCCAGTGCATAATTCTAATACCATCGCTGTTGTAGATAGCTCTGATACTGGTGATGGCAATGCGGTTTGTTCTAAGAAGCCAGTGTGGAACAAGCCCTCAAATGGCGTCGTTGAGGTCGGTCCTGTGATGGGTGCTGAATCATGGCCAGCTTTGTCTAAACCCACCAAAGCTTCTGGTAAATTGCCAGCTGAATCCTCTTCCAAGACTGCTGTTGATGGATCACTCTCCACTTCCATGGGGCCTCGAACTTTGCACTCCCCTCAGAAACAAGGGGCGAGCAATATAAAACCTAATTCTGCCACAAATCACAATGTGCCTAATAGACAAAGACCGATGAGGCGGACGGGGGGCAGCAACATTGGATCTGGCCCTGATCAGAGCAGCTACTCCAACCCTCCCCCACCACCGCCACCACCTCCATTTCCTGTATATCAGCTCCCTCCAGTTAGTTATGCTAATATGGTACCAAGTATCCCTGACCCTTCTCGGCGAGATCATTACCGGAACAATAACTGGGATGCAAGACCATTAGTTGGGGGTTTTGTTCCAAGGATGAATGAACAGCGGGGATCCTCTCGCAGGGGTAATTTTGGGGCCCATCCACGAGGGGACAGTTCCTATCATAATAATCATGGTGGCAGGCGTGATCAGGATCGTGAAAGTTATGTGAATCCTAGAGATGCTCATGTACCTCAGCCAAGGATGCCTCCAAGAGGATTATTAAGGCACCCACCACCTAGTACTGCTGCATTTGGGGGTCCTCAGCCCATTGCGCCTTTTCCAAATCCCATTGGTTTTCCTGAGTTTTATTACTTTCCAGCAGTGCCATTGGAGCACTTTAGGGGTATGCCATTCTTCTCCCAAAACCCTTCTCCTGCAACATTTTTCCCAGCTTCAGAACCTCCTCTTCCCAATATGATAGTCAAGCAAATTGATTATTATTTTAGTGATCTTAATTTAGTGAAAGATGAGTATTTAAGGTCCAACATGGATGAACAGGGTTGGGTTCCAATTACGTTGATAGCAAACTTTCCTCGGGTTAGGAGTTTGACAAGCAACATCCAGTTAATATTGGATTCGTTAAGAACTTCTACTGTTGTGGAAGTGCAGGGTGACCTGTTGAGGAGGCGTAATGACTGGATGAGATGGCTTCCCTCTGCTCAGCTTCGGGCTGATTCTAGTTCTTTAGCTCCGGGTAGATCAAGATATGCTAACTTGGAAGCTGATTTCCAAACTCTCCGTGGAAGAAACAACTAA 1533 0.4984 MITAAKSSSNHHSPTTAPSPVPSGPRKNLPSPWAQVVRGGDTDFTAAVGIHESPPSSSSSSSSLATGAAEQAPAASEPAQSSSPKVVPASPPPVHNSNTIAVVDSSDTGDGNAVCSKKPVWNKPSNGVVEVGPVMGAESWPALSKPTKASGKLPAESSSKTAVDGSLSTSMGPRTLHSPQKQGASNIKPNSATNHNVPNRQRPMRRTGGSNIGSGPDQSSYSNPPPPPPPPPFPVYQLPPVSYANMVPSIPDPSRRDHYRNNNWDARPLVGGFVPRMNEQRGSSRRGNFGAHPRGDSSYHNNHGGRRDQDRESYVNPRDAHVPQPRMPPRGLLRHPPPSTAAFGGPQPIAPFPNPIGFPEFYYFPAVPLEHFRGMPFFSQNPSPATFFPASEPPLPNMIVKQIDYYFSDLNLVKDEYLRSNMDEQGWVPITLIANFPRVRSLTSNIQLILDSLRTSTVVEVQGDLLRRRNDWMRWLPSAQLRADSSSLAPGRSRYANLEADFQTLRGRNN* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3338 510 MobiDBLite consensus disorder prediction 220 238 - -
Lja5g3338 510 MobiDBLite consensus disorder prediction 1 240 - -
Lja5g3338 510 PANTHER LA-RELATED PROTEIN 1B 42 504 - -
Lja5g3338 510 Pfam La domain 399 454 IPR006630 -
Lja5g3338 510 MobiDBLite consensus disorder prediction 51 84 - -
Lja5g3338 510 MobiDBLite consensus disorder prediction 270 330 - -
Lja5g3338 510 ProSiteProfiles La-type HTH domain profile. 389 478 IPR006630 -
Lja5g3338 510 MobiDBLite consensus disorder prediction 151 219 - -
Lja5g3338 510 CDD LAM 397 469 - -
Lja5g3338 510 PANTHER LUPUS LA PROTEIN-RELATED 42 504 IPR045180 -
Lja5g3338 510 SUPERFAMILY "Winged helix" DNA-binding domain 387 477 IPR036390 -
Lja5g3338 510 MobiDBLite consensus disorder prediction 92 112 - -
Lja5g3338 510 MobiDBLite consensus disorder prediction 1 17 - -
Lja5g3338 510 MobiDBLite consensus disorder prediction 299 317 - -
Lja5g3338 510 Gene3D - 389 478 IPR036388 -
Lja5g3338 510 SMART la 393 471 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3338 Lja-Chr5 64851477 64855916 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3338 K18757 - gmx:100785504 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3338 5 64851477 64855916 Lja5g3338 5 64851477 64855916 ECH
Lja5g3338 5 64851477 64855916 Lja1g3480 1 43391376 43394589 PCT