Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3333 ATGGCAGAAGTGGAGCTAGTCTCTGATTCACGTTTGGAACAGGATGTGAAGTTGAAAATGGAGCAACTGGGTAAGCCAACCAAAACGGAGAGTGTTTCGTTTTTGGGCTTGTTTTCTGCGGCTGATGCTACTGATTTAGTGTTAATGTTCCTCGGAAGCGTTGGTGCGTGTGTCCATGGTGCGGCTCTTCCTGTTTTCTTTGTTTTGTTTGGTCGTATGATTGATTCTTTGGGACATCTTTCTAAGCACCCTCACAAGTTGTCCTCACGAATTTCTGAGCATGCTTTGTACTTGGTATATCTTGGAGCCGTTGTTCTTGTAGCAGCTTGGATGGGTGTTGCATTCTGGATGCAAACGGGGGAGAGGCAAACAGCCCGTTTGCGCTTAAAATATTTGCAGTCAGTGCTAAAGAAGGATATTAATTTCTTTGACAATGAAGCCAGGGATGCCAATATCCTTTTCCACATCTCCAGTGATGCAATATTGGTACAAGATGCAATTGGTGACAAGACAGGCCATGCCATGCGATACCTTTCTCAATTCATTGTTGGATTTGCCGTTGGATTTATGTCAGTATGGCAGCTTACACTACTCACCTTAGCTGTTGTTCCATTGATAGCCATAGCAGGAGGAACTTATACAATAATCATGTCTACATTATCAGAAAAGGGTGAGGCAGCTTATGCTGAAGCTGGGAAGGTTGCAGAAGAGGTAATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTAGTTCCTACTCCAAGTCTCTTGATAAAGCTCTGAAGCTTGGTAAGAAGAGTGGTTTTGCAAAAGGAGTTGGAGTAGGCTTTACATATGGGCTGTTATTTTGTGCTTGGGCATTGCTTCTGTGGTATGCAAGCATACTTGTGATGCATCATAGGACAAATGGAGGGAAAGCATTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCCCTTGGTCAAGCTGCTCCAAACCTTGCTGCCATTGCTAAAGGGCGTGCAGCTGCGGCCAACATCATGAACATGATTGCATCCGTTTCAGACACTTCTAAAAGCTTGGATGATGGCACTATTTTGCAACAAGTAGCAGGGAAAATTGAATTTTGTGGGGTCAGCTTTGCTTACCCCTCAAGATCCAACATGATCTTTGAAAATTTGAGCTTCTCAGTGAGTGCTGGGAAGACTGTAGCAGTTGTTGGTCCTAGTGGTTCTGGAAAAAGCACCATCATTTGCCTTATTCAAAGGTTCTATGACCCCACTTCAGGTAAGATCATGTTGGATGGAAATGACTTGCAGAATCTTCAATTGAAATGGTTGAGAGAACAACTAGGCTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGAAAACATTTTATTCGGAAAAGAAGATGCCAGCATGGATCAGATCATACAAGCTGCCAAGGCTGCAAATGCACATTCTTTCATAATAGGATTACCTGAAGGTTATCATACACAGGTTGGAGAGGGTGGAACCCAACTTTCAGGGGGACAAAAACAAAGAATTGCTATTGCAAGAGCTGTGCTTAGGAACCCAAAAATATTGCTTTTAGATGAAGCGACCAGTGCTCTTGATTCTGAATCAGAACTAATTGTCCAGCAGGCATTGGATAAAATAATGTCAAACCGGACGACAATAGTTGTTGCACATCGACTATCCACCATACGCGATGTAGATACAATAGTTGTGTTGAAGAACGGTCAAGTTGTTGAAAGTGGAACACATTTGGAATTGATGTCCAAAAATGGGGATTATATGGGCCTGGTGAGTTTGCAGGCATCACAAAACCTCACAAGCTCTAGCTCAATATCTCGCTCCGGAAGCTCAAAAAATTCTAGTTTTCGAGAACCTTCAGACAACCAGAACCATGAGGAGGATCTGCAGATGGTTACAGCAAAAGAACTGAAATCAAGTGTTCAAGGATTGTCATCCAACACTGCTTCCATTCCATCAATTTTGGATTTGCTAAAACTGAATGCTCCAGAGTGGCCCTGTACAATACTTGGGTCAGTAGGTGCAGTGATGGCTGGCATGGAAGCTCCTCTCTTTGCCCTTGGAATCACCCACATTTTGACTGCATTTTACTCTCCTCATGCCTCTAAAATGAAGCAAGAAGTTGACCGGGTAGCTCTTATATTTGTTGGAGTAGCTGTTGTCACTATACCTATTTATCTGTTGCAGCACTACTTTTACACATTAATGGGAGAGCGTCTCACTGCCCGTGTGCGTCTATTAATGTTCTCAGCTATTCTTACCAATGAGGTTGCTTGGTTTGATTTGGATGAGAACAACACTGGATCACTAACAGCCATGCTAGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGACTCTCAACAATTGTGCAAAATGTAGCTCTCACTGTAACCGCGTTTGTTATTGCCTTCACATTGAGTTGGAAACTAACAGCAGTGGTTGCGGCCTGTCTTCCTCTTCTCATAGGAGCTTCTATCACAGAGCAACTATTTCTCAAGGGATTTGGAGGAGATTACAGCCGGGCTTACACCAGAGCAACTTCTTTGGCACGTGAAGCTATTGCAAACATACGTACCGTTGCTGCTTTTGGCGCAGAAGATCGAATCTCAATCCAATTTGCTTCTGAATTGAACAAGCCTAACAAGCAAGCACTTCTAAGAGGCCACATATCAGGTTCTGGGTATGGCGTAACCCAGCTGTTTGCCTTCTGCTCCTATGCACTTGGCCTTTGGTATGCCTCCATTTTAATCAAGAAGAAAGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTGATCATCACTGCACTGTCAATAGCAGAAACACTAGCTCTCACCCCAGACATTGTGAAGGGGACACAAGCACTGGGATCAGTTTTCAGCATTCTGCGAAGGAGAACCGCCATCAACCCCAACGACCCGGACGCGGAGATGATAACTGAAGTCAAAGGAGAAATAAATTTTAAAAATGTGTGCTTCAAGTATCCGATGAGACCTGATATCACCATATTTCAGAACTTAAACCTAAGAGTCCCAGCAGGGAAGAGTCTAGCAGTAGTAGGCCCAAGTGGTTCAGGGAAGAGCACTGTGATTTCTCTTGTGATGAGATTCTATGACCCCACTTCTGGCTCAGTTCTGATAGATGAATGCGACATCAAAAGCCTAAACTTGAGATCCTTAAGGCTGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCTACCACAGTCTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATCGAAGTGATGAAGGCTGCCAGAGCAGCAAATGCTCATGAATTCATCAGTAGAATGCCAGAAGGGTACAGAACTGAGGTTGGTGAGAGAGGAGTGCAGTTATCAGGAGGACAGAAACAAAGGGTGGCAATTGCTAGAGCAATTCTGAAAGATCCATCCATTCTTCTGTTGGATGAAGCAACTAGTGCACTGGACACGGTGTCGGAGAGGCTGGTCCAAGAGGCTCTTGATAAGCTCATGGATGGAAGAACAACAATTTTGGTAGCTCACAGGCTTTCAACTGTTCGTGATGCCGACAGCATTGCAGTGCTGCAACAGGGGAGGGTTGCTGAAATGGGAAGCCATGAGAAGCTGATGGCCAAACCCGGAAGCATATATAAGCAGTTGGTAAGTCTACAACAAGAAAAGCGGGAAGTTTCTTAA 3756 0.438 MAEVELVSDSRLEQDVKLKMEQLGKPTKTESVSFLGLFSAADATDLVLMFLGSVGACVHGAALPVFFVLFGRMIDSLGHLSKHPHKLSSRISEHALYLVYLGAVVLVAAWMGVAFWMQTGERQTARLRLKYLQSVLKKDINFFDNEARDANILFHISSDAILVQDAIGDKTGHAMRYLSQFIVGFAVGFMSVWQLTLLTLAVVPLIAIAGGTYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVSSYSKSLDKALKLGKKSGFAKGVGVGFTYGLLFCAWALLLWYASILVMHHRTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGRAAAANIMNMIASVSDTSKSLDDGTILQQVAGKIEFCGVSFAYPSRSNMIFENLSFSVSAGKTVAVVGPSGSGKSTIICLIQRFYDPTSGKIMLDGNDLQNLQLKWLREQLGLVSQEPALFATTIAENILFGKEDASMDQIIQAAKAANAHSFIIGLPEGYHTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDSESELIVQQALDKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSKNGDYMGLVSLQASQNLTSSSSISRSGSSKNSSFREPSDNQNHEEDLQMVTAKELKSSVQGLSSNTASIPSILDLLKLNAPEWPCTILGSVGAVMAGMEAPLFALGITHILTAFYSPHASKMKQEVDRVALIFVGVAVVTIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEVAWFDLDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLTAVVAACLPLLIGASITEQLFLKGFGGDYSRAYTRATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKQALLRGHISGSGYGVTQLFAFCSYALGLWYASILIKKKESNFGDIMKSFMVLIITALSIAETLALTPDIVKGTQALGSVFSILRRRTAINPNDPDAEMITEVKGEINFKNVCFKYPMRPDITIFQNLNLRVPAGKSLAVVGPSGSGKSTVISLVMRFYDPTSGSVLIDECDIKSLNLRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAARAANAHEFISRMPEGYRTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMDGRTTILVAHRLSTVRDADSIAVLQQGRVAEMGSHEKLMAKPGSIYKQLVSLQQEKREVS* 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3333 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 551 1244 IPR039421 -
Lja5g3333 1251 Gene3D - 363 610 IPR027417 -
Lja5g3333 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 609 IPR027417 -
Lja5g3333 1251 SUPERFAMILY ABC transporter transmembrane region 40 346 IPR036640 GO:0005524|GO:0016021
Lja5g3333 1251 Pfam ABC transporter transmembrane region 684 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g3333 1251 Pfam ABC transporter transmembrane region 50 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g3333 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 608 IPR003439 GO:0005524
Lja5g3333 1251 CDD ABC_MTABC3_MDL1_MDL2 1006 1244 - -
Lja5g3333 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g3333 1251 SMART AAA_5 399 585 IPR003593 -
Lja5g3333 1251 SMART AAA_5 1033 1219 IPR003593 -
Lja5g3333 1251 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 32 473 - -
Lja5g3333 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1244 IPR027417 -
Lja5g3333 1251 Pfam ABC transporter 1025 1173 IPR003439 GO:0005524
Lja5g3333 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 989 - -
Lja5g3333 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Lja5g3333 1251 MobiDBLite consensus disorder prediction 616 640 - -
Lja5g3333 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 333 - -
Lja5g3333 1251 Pfam ABC transporter 391 539 IPR003439 GO:0005524
Lja5g3333 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 451 573 IPR039421 -
Lja5g3333 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 32 473 IPR039421 -
Lja5g3333 1251 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524
Lja5g3333 1251 SUPERFAMILY ABC transporter transmembrane region 672 984 IPR036640 GO:0005524|GO:0016021
Lja5g3333 1251 Gene3D - 996 1251 IPR027417 -
Lja5g3333 1251 Gene3D ABC transporter type 1, transmembrane domain 37 975 IPR036640 GO:0005524|GO:0016021
Lja5g3333 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 338 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g3333 1251 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 451 573 - -
Lja5g3333 1251 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 551 1244 - -
Lja5g3333 1251 Coils Coil 1243 1251 - -
Lja5g3333 1251 MobiDBLite consensus disorder prediction 616 633 - -
Lja5g3333 1251 CDD ABC_MTABC3_MDL1_MDL2 373 609 - -
Lja5g3333 1251 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3333 Lja-Chr5 64768809 64775390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3333 685 1251 Calmodulin-binding Proteins AT2G36910 41.259 6.29e-132 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3333 K05658 - gmx:100787093 2077.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3333 5 64768809 64775390 Lja5g3333 5 64768809 64775390 ECH