Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3331 ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCCCCTTCTCGAGTCGAGGAGTTGATCTCTGCAATGCAAAGGGAGCAAGATTCTGTTGTTAAGAATGCTGGTGATGCAACAAGGCAGTGGGCATCTGTTGCTAGCACTATTGCTGCTACAGAGAACAAAGATTGTCTTGATCTTTTTATTCAATTAGATGGACTTCGGTTTATCAATAGATGGTTAAATGATGCTCAAAATGTTGGTTTCAGTGCAAACGATGGCACCATTGAAGAGTCAACTACCGCAATGTTACGAGCAGTTGAAAAGCTGTATATAGACAGAGAGAAGTCAATTTCATCAGGAATCTGGGCAACTGTAAGTAACCTTCTTGGTCATCAGAGCTCTAAGGTTCAGGATAGAGCAAGAGTATTATATGACAACTGGAAAGGAGGTGGAAATGGAGATGCTGAATCTCAACATTCAGATATTGGTAGAATGAACGTGAGTGATAAGGTTGTTAGGGAGGAGTGCCACTTGTCTTCTGTGAAAGAAGCTGGCAATGATGATGATCATGCCTCACGAGTTGTTGGAGGTGAGGAGTCTCTATTGAGAAGCTCAGACAGTCAGTTACCAGAAAAGATTGCTAATGTGCAGATACATAATTCTGACAACGCATTCCAGTCCTCTCTAAGTTTGGATTGTGAAGATACCAAAGAGAAATCAAACCAACTTGCTATTGTTTTGGTTCCTACTCAAGAAATTACTCCCGTAGGTGAAGCTGGGATGACATCATCTGAGACCCATAACTTACCTGCTCCAAAGCAAGGCAGTTTCAAAGGACAACCAGATGATTTACAGTTAGGTGATTTATCCAAAAAGGAGATGGAAGATCAAAATGCTAATTGTCCTCCAGAAAAATTAAGGGCACCTCATATCTCTTTAGCTCTAATACAGCCTGATCCTGGACCTGTTTCTATTGGTGCTAGTGAAGCATCAATTAAGCCGGAATCTGATTTAGAACATAACATTAAAAGCAATGAGGATGGTGTTTGTCATAAAATAATTGTTTCTGATAGCGTGGGAATAACTGCATCTGATAGAATGAGTGAGGTGGGTGATGCCAAAGCTTTAAATTCTAGCAATCCGCAACCAGACAAAGCTACAGAAAACAATGATGGGTGTTGTTCTAATACAATGCAGGACTTGTCAATCAGTGGCATTAAGTTGGAAAAGCCCGAGGATTTACAGATGTCTTTCCTCGAAACAGAAGATGGCAGAGAAGTAAAGGAAGAAGGCAAGGGCCATGTTTCTAATAATGACAATGGCACCTCAAATGGTTCTGAATCTTTTAAACAAGGAAAAGGTCCTAGAAGCCCCAAGATTATTGACAAGAATTCTGACATAGAACTTGATTGTGGTATTGTTGATGCTCTAGAAGTTGCTCGACAAGTTGCTCAGGAAGTTGAGAGAGATGTCAAAGCAGTAAAGGAGGACAGCCATGTCTCTACTCAAGGTGACGATACCTCAAATGGTTCTGATTCTTTTAAACAGGGGGAAGGTCCCAAAAGCCCTGGCGTTGTTGACAAGAATTCTGACATGGAACTTGAGTATGGTATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCTGAAGAAGTTGAGAGAGAAATCCAGAACTCTTCTTCAGAGAAAATCTCAGAAGGCGGGAACAGGCAAGCTGGCAGTTCAGATTCTGTAGGGAAAAATGATGAACTTGCTCGTGTCCTACCTGAGGAGGTATCATCCAGGCAAAGCAACCCTGCTGAGGCATGTTCTGAAGAGGAAGGGCATATGAGTGTTTTAGGTGATATTGAGGCTGAGCCAGAAGGCCCAGAATGCCTCCCTGACTTGGAGTCCTCGCAGGTGACTGAAGCAGCTCGAGATCCAGGAGGTAATTCAGAAAAAAGCCTCTGTACCTTTGATCTCAATGAAGAAGTTGGTTCTGATGACGTGGGTGTTTCTTCTAATGCAATGTCTACCACGCCAATACCTATTGTCTCTGCTTCAAGGACTGCACAAACTTCTGGGTTGCCAACAGCCCCTTTAAAGTTTGATGGAACACTTCAATGGAAAGGATCGGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCATGAAAATACGGAAAGTGAAAAGAATGTTTCTGTTGGTGGCAACTCTGATATTTCCAAGCAGAGGCAGGATTGCCTTGATATTGATCTAAATGTGGCTGAGGGTGAAGAAGAATTTGTAAAACAAATTGGTGAATCGCCAGGCCTTCCTTCTGGGCAATCATCAGTGGAACTTAGTCCTAAAAGATCAAGGAGGTTCGAGTTGGATCTAAACAGTGTTGGTGATGATGGTGATACCCAACCTTCGGATCAGAGGATGGAGGGGCAACTCTTATCAGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCGTCATCATCGTCGATGCAGCCTTCAGTTCGAAACATTGATTTGAATGACAAACCGCTTTTTCAAACCGATTTAGTGGACAAAGCGCGGCCTACAAAGTCGTCTTCAAATGTTGAAACGTATGGACTTTCTAAATCAGATGCTCCTGTGATCTCAATTTTAGGTGCCAAGGTGGAAGTGGGTAGAAAAGAATTTGTTCCTCAAATTTGGTCTATACCAAATGGCAAGGCTATTATTGAGCCTGCAATGGATCTCACAATGTCTGGAGCAGGTGGTGTTTTAGGGCTGACCCCCACAGTACCCTACAATAATCATTCAACTGTTTTTGGATATAATCAACTGACATCAGCATCCCCCTTGTCTCTTTCATCAGCAAAGTATGGATCAGGTGGCACAATTCCATACATGGTTGACTCAAGAGGAGCTCCAATTGTGCCTCAAGTTGGTGCTGGTGTTGGACCTTCATCTTACACTCAGCCTCCATTTATTATGAGCATGACAGGGACACAACTTGGTTTAAATGGTGTTGGACCTTCACGTCCCAACTTTGATCTTAACTCTGGCTTGTTGATTGATGGTGGGAATAGAGATGCTTTGGCTACAAGGCCATTTTTCTTTCCTGCTCAGGGCAGAGCTATGGAGGAGCAGCATGTAAGGACCCTTCCACAATCCTCAAGTTCTTCAGGGGTTGGTGGGAAAAGAAAAGAACCAGACAGTAGCTGGGAAACCTATCCATTTAGCTACAAACATCAGCAACCTCCGTGGAAGTAG 3225 0.4319 MTLEDFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENKDCLDLFIQLDGLRFINRWLNDAQNVGFSANDGTIEESTTAMLRAVEKLYIDREKSISSGIWATVSNLLGHQSSKVQDRARVLYDNWKGGGNGDAESQHSDIGRMNVSDKVVREECHLSSVKEAGNDDDHASRVVGGEESLLRSSDSQLPEKIANVQIHNSDNAFQSSLSLDCEDTKEKSNQLAIVLVPTQEITPVGEAGMTSSETHNLPAPKQGSFKGQPDDLQLGDLSKKEMEDQNANCPPEKLRAPHISLALIQPDPGPVSIGASEASIKPESDLEHNIKSNEDGVCHKIIVSDSVGITASDRMSEVGDAKALNSSNPQPDKATENNDGCCSNTMQDLSISGIKLEKPEDLQMSFLETEDGREVKEEGKGHVSNNDNGTSNGSESFKQGKGPRSPKIIDKNSDIELDCGIVDALEVARQVAQEVERDVKAVKEDSHVSTQGDDTSNGSDSFKQGEGPKSPGVVDKNSDMELEYGIVDALEVARQVAEEVEREIQNSSSEKISEGGNRQAGSSDSVGKNDELARVLPEEVSSRQSNPAEACSEEEGHMSVLGDIEAEPEGPECLPDLESSQVTEAARDPGGNSEKSLCTFDLNEEVGSDDVGVSSNAMSTTPIPIVSASRTAQTSGLPTAPLKFDGTLQWKGSAATSAFRPASPHENTESEKNVSVGGNSDISKQRQDCLDIDLNVAEGEEEFVKQIGESPGLPSGQSSVELSPKRSRRFELDLNSVGDDGDTQPSDQRMEGQLLSGRNGYWSPSPASSSSSMQPSVRNIDLNDKPLFQTDLVDKARPTKSSSNVETYGLSKSDAPVISILGAKVEVGRKEFVPQIWSIPNGKAIIEPAMDLTMSGAGGVLGLTPTVPYNNHSTVFGYNQLTSASPLSLSSAKYGSGGTIPYMVDSRGAPIVPQVGAGVGPSSYTQPPFIMSMTGTQLGLNGVGPSRPNFDLNSGLLIDGGNRDALATRPFFFPAQGRAMEEQHVRTLPQSSSSSGVGGKRKEPDSSWETYPFSYKHQQPPWK* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3331 1074 MobiDBLite consensus disorder prediction 423 462 - -
Lja5g3331 1074 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 496 1074 - -
Lja5g3331 1074 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 500 - -
Lja5g3331 1074 Coils Coil 476 496 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 372 395 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 369 395 - -
Lja5g3331 1074 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 155 IPR035441 -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 435 450 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 806 829 - -
Lja5g3331 1074 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 496 1074 - -
Lja5g3331 1074 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 500 - -
Lja5g3331 1074 Coils Coil 541 561 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 1036 1051 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 488 528 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 552 671 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 706 735 - -
Lja5g3331 1074 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 1033 1074 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 259 279 - -
Lja5g3331 1074 MobiDBLite consensus disorder prediction 560 577 - -
Lja5g3331 1074 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3331 Lja-Chr5 64750479 64756003 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja5g3331 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3331 - - lja:Lj5g3v0238160.2 2087.38