Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3317 ATGGCCCTCTTAACTTTCTTGCCTGAACAATCTAATCCCAAAAAACAACACCATCCCCAACGCAAAAGAAAGCAGCACCAGAAACCACAACAGCAGCAACAAAAACAACATCATGAGAAGCAGGTTAATAAGCAGAAACCAGAACCACATCAGCAACAACAGAAGCAGAAGCAGATTAACAAGCAGAAACCACCATCTTCATGGGACCAAATCAAGAACCTGATCAGCTGCAAGCAGATTGAAGGGTCAAGGGTCATTGACCCTTCAAAAGGGCACTCCTACTCCAAGCTAGGTTCCTCTTGCAGTTCCATTTGCAGCTTCAAGGATGTTGTTCATGGAAACACCCGAGTTGTTCACAGGTCTGATAACTCTTCCCCTGAAAGCAGCACCCTGGGTCAGGAAACAGGACTCCTCAGTAGAAAACCAGCCCCACATCACTCAACATCAGGTTCTGCAGGGAAATCAAACTGTAGATCAGGATCAGGATCAGGAACCTACACCTCTAGGGGAATGCAATTCAGAAAGCTCTCTGGATGTTATGAATGTCACATGATCATTGACCCTAGCAGGCAACCAATGCCAAGGAGCACTATTTGTGTTTGCTCTCAATGTGGTGAGGTTTTCCCTAAGATGGAAAGCTTGGAGCTTCATCAGGCTGTTCGTCATGCTGTTTCGGAGCTGGGTCCAGAGGATTCGGGTCGCAACATAGTGGAGATAATATTCAAGTCAAGCTGGTTGAAGAGGGACACTCCAATGTGTAAGATCGAACGGATACTAAAAGTGCACAACACCCAACGCACGATCCAACGGTTCGAGGAGTGCAGGGATGCAGTCAAGTCGCGTGCGGTCAGCAGCACCAAGAAAAACCCTCGCTGTGCCGCGGACGGCAACGAGCTCCTCCGCTTCCACTGCACCGCGCTAACATGCGCGCTCGGCGAACGCGGCTCCTCCGCACTCTGCTCCGCCGGGCCCAGCTGCGGCGTCTGCACCATCATCCGGCACGGATTCCAGGGCGGGAAGGGAGTGAAGACCACCGCCAGCAGCGGCAGGGCGCATGACTCGGCGGCGGCGCAGTGCGGCGGTGAGGGTTCTAGGAGGGCAATGCTGGTGTGCCGTGTGATTGCCGGGAAGGTGAAGCGCGTGGCGGAGGAGTCTCCGCCGCCGCCGCAGCCGCAGGAGGAGGAGGAAAGTGTTTCGTATGATTCAGTGGCAGGATTTGCAACAGGAATCTACTCGAATCTCGAGGAGTTGGTTGTTTTCAACCCGAGGGCTATTCTTCCTTGTTTCGTTGTGATTTACAATGTTCTTCCTTTCTGA 1317 0.5239 MALLTFLPEQSNPKKQHHPQRKRKQHQKPQQQQQKQHHEKQVNKQKPEPHQQQQKQKQINKQKPPSSWDQIKNLISCKQIEGSRVIDPSKGHSYSKLGSSCSSICSFKDVVHGNTRVVHRSDNSSPESSTLGQETGLLSRKPAPHHSTSGSAGKSNCRSGSGSGTYTSRGMQFRKLSGCYECHMIIDPSRQPMPRSTICVCSQCGEVFPKMESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKRDTPMCKIERILKVHNTQRTIQRFEECRDAVKSRAVSSTKKNPRCAADGNELLRFHCTALTCALGERGSSALCSAGPSCGVCTIIRHGFQGGKGVKTTASSGRAHDSAAAQCGGEGSRRAMLVCRVIAGKVKRVAEESPPPPQPQEEEESVSYDSVAGFATGIYSNLEELVVFNPRAILPCFVVIYNVLPF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3317 438 MobiDBLite consensus disorder prediction 16 31 - -
Lja5g3317 438 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 51 435 - -
Lja5g3317 438 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 51 435 - -
Lja5g3317 438 MobiDBLite consensus disorder prediction 1 68 - -
Lja5g3317 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 199 227 IPR013087 -
Lja5g3317 438 SUPERFAMILY ADP-ribosylation 224 434 - -
Lja5g3317 438 MobiDBLite consensus disorder prediction 47 68 - -
Lja5g3317 438 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
Lja5g3317 438 MobiDBLite consensus disorder prediction 32 46 - -
Lja5g3317 438 MobiDBLite consensus disorder prediction 117 164 - -
Lja5g3317 438 Gene3D - 223 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3317 Lja-Chr5 64343397 64346912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3317 1 436 C2H2 Transcription Factor Family AT1G75710 60.334 4.87e-177 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g3317 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3317 - - aprc:113874200 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3317 5 64343397 64346912 Lja5g3317 5 64343397 64346912 ECH