Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3311 ATGTCATCGAAATGCAGCAAGATCCGCCACATTGTCCGGCTCCGCCAGATGCTACGGCGGTGGCGCAACAAAGCCCGCATGTCCTCCGCCACCCGCGCCGCGCCATCCGATGTGCCTGCAGGACACGTGGCAGTTTGCGTGGGCGCAAGCTACACCCGATTTGTGGTGCGCGCGACACACCTGAACCACCCTGTCTTCAAGAAGCTTCTGGTCCAAGCTGAGGAAGAGTACGGCTTCTCCAACTCCGGTCCGTTAACAATCCCCTGCGATGAAACCCTCTTCCAAGAGATCCTCCGGTTCATTTCCCGGTCTGACTCAGACAAATCGAACCGGTTCATCAACTTTGATGTTGAGGATTTTCAGCGGTACTGCCACGTGGGATTCATGAACAACCTTGATTTCTGGCCAGAGTCTCGACCGCTACTCACTGATAAAACCATCTGGTAG 447 0.5548 MSSKCSKIRHIVRLRQMLRRWRNKARMSSATRAAPSDVPAGHVAVCVGASYTRFVVRATHLNHPVFKKLLVQAEEEYGFSNSGPLTIPCDETLFQEILRFISRSDSDKSNRFINFDVEDFQRYCHVGFMNNLDFWPESRPLLTDKTIW* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3311 148 PANTHER SMALL AUXIN-UP RNA-RELATED 4 144 - -
Lja5g3311 148 Pfam Auxin responsive protein 13 100 IPR003676 GO:0009733
Lja5g3311 148 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 4 144 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3311 Lja-Chr5 64233184 64234147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3311 3 142 Calmodulin-binding Proteins AT4G34750 51.389 9.95e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3311 K14488 - gmx:100782525 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3311 5 64233184 64234147 Lja5g3311 5 64233184 64234147 ECH