Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3305 ATGGACGACAAGATCGACGCCGCAGACAAAAAGGTGCTGGTTGATATTGTAAAATTGTCACAAAAAAGAGGCATGAAGGGTAATCTGGGAGACTGGAAAGAGTTCTTGAACAGCTATGATAAAAAGTTTGGGGCAAGTATGAGTGATCCAGCAAAGAGGACCCATGAAGTCTTGGCTGCATTTCTGAAGACTTTCTCCATGGAGGATGATTTGAAGTTTTTTGGCAACATCATGCGACATCATTCAAGTCAATACTCGGTAGAGAAACTGAAAGATAAATCTCATGATTCACCTGAGCAGGGGCTAGTCCAAATAACTCTCCAACACCCATTATATCCATTGGATTATTCATTTCAATCAATTGATGAGAGATGGGTAATTATAAACCTCAGAAAAAATAAAAAAGTGATGAGGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTTGAAGTCTGTGTGGTAGACCACAATTTAAAGGTCAAGCTACACAAACGTGTAAAACCCGACAAAGCAATTGTAGACTATAGAACAGAGGTTACTGGTGTTTCTTCTCGAGATCTAGAGACAGTTACGTGCACCTTGGCTGATATACAGAAAAAGATGAAGAGGTTGTTATCAAATGGAACCATATTGGTCGGACACAGTTTAGACAATGATCTACGTGTGCTGAAGCTAGATCATGTTAGAGTGGTTGACACTGCATATATCTTCCAATCCTTGGATGGATCTATTCACAGGAAACCTTCTTTGAACGGTTTATGTCAGGCTGTGTTAGGCTATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCAATGAAACTTGTTCTTGCAAGGATCAAGCATGGCGTCGATAAAGAATTTCCATTTACGTTGGTTCAGGAGCATGTTTCAGAAAGTGATATGACAAAGCTGCTTCTGCACGGGATACCAACCTCTGTAAACATTGAAACACTACATAAAATTGTTCCTGGAGACTTCACAATAGAAGTGAAGCCATCCAGGAAAGGTCAAAGAGCAAAATATTCTGCTTTAGCTACCTTTAAGAATCAACAAGAGGCATATGAGGCCTATGAAAATGTCCAAGGAAGCCAAACAAAGGATTCATTTGGACGTCCACAGAAAGAAGTCATGTTTCAGCAAAGTACAGGCATGACTGTGAGTCTATTTGTTCGGAAAATGACAGCTGATGAACCCGATAACCTGCTTCCATCTAAGAGAGCTTTGCAAGTGGATGAGGCAGATGAGGCAGTTAATGCTTCCAAAAAAGCAAAAACGGTTCCTCAAATTGAAGAGGATGCCCTGATAGGCTCTACTAAGGGTGACACTTGCACTCACTTGAAAGGGATTGAAGCCCTGAATCAACAATTGAAGCAAAAAGATTTGGAGATTGAATCGTTGAGGGAGCAGTTAAGAAAGAGAGATTTTGAAGTCTCCAAGCTGCATATAATGATATCCTCCTTGAAAAATCGAACAAACAAAACAGGGAACAAATTTGCTGCTCTCTAG 1560 0.4058 MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAAFLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHDSPEQGLVQITLQHPLYPLDYSFQSIDERWVIINLRKNKKVMRSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVKPSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTKDSFGRPQKEVMFQQSTGMTVSLFVRKMTADEPDNLLPSKRALQVDEADEAVNASKKAKTVPQIEEDALIGSTKGDTCTHLKGIEALNQQLKQKDLEIESLREQLRKRDFEVSKLHIMISSLKNRTNKTGNKFAAL* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3305 519 PANTHER SMALL RNA DEGRADING NUCLEASE 2 11 428 - -
Lja5g3305 519 Coils Coil 198 218 - -
Lja5g3305 519 Gene3D - 137 313 IPR036397 GO:0003676
Lja5g3305 519 SMART exoiiiendus 141 302 IPR013520 -
Lja5g3305 519 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Lja5g3305 519 CDD REX1_like 143 294 IPR034922 -
Lja5g3305 519 Coils Coil 467 491 - -
Lja5g3305 519 Pfam Exonuclease 143 292 IPR013520 -
Lja5g3305 519 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3305 Lja-Chr5 64080687 64085938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3305 138 273 C2H2 Transcription Factor Family AT3G27970 35.294 1.04e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3305 K14570 - gmx:100785565 754.592