Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3289 ATGAAGATCCAGTGCGATGTTTGCAGCAAAGACGAGGCTTCAGTATTCTGCACCGCCGACGAAGCCGCCCTCTGTGATGGCTGCGACCACCGTGTCCACCATGCCAACAAACTCGCCTCTAAGCACCAACGCTTCTCTCTTCACACCCCTTCTTCAAAGCAACACCCTCTCTGTGATATTTGCCAGGAGAGAAAAGCTTTCATGTTCTGTCAGCAAGACAGAGCGATTCTGTGCAAAGAGTGTGACATGTCGATTCACTCTGTCAATGAGCATACCCAGAAGCATGATCGGTTCCTTCTCACTGGTGTGAAGCTCTCTGCTACTCCTAAGCTTTATTCTTCTGCTTCTACTGCTTCAACACCCTCCAAGACCAAATCTGGTTTAACCAATTCCTCTGATGCTAAGTCAAAACCTTCCTTTTCTTCTTGTTCTAAATCTAACCTTTCACATCAAGGTTTGATTGCAAAGACAGTTCCTTCAGTAGAATCAGTACTACCCCATACTACTACCATCAATAAAGTTGGAGGAAGCTTGGTAACCATGGCAGGAACAGGTTCCACTAGCAGCATATCTGAGTACTTGATAGAGACACTCCCTGGTTGGCAAGTTGAAGACCTTCTTGATTCATATGTTGTTCCCTTTGGTTTCTCTAAGGGTGATCATGACATATTGCAACAGTTTGATGATGCTGGTATTGAGGGGAATCTGTGTTCATTCTCACCTAATAACAATGGGATCTGGGTTCCTCAAGCACCACCTCCTCTGTATTCTTCTCAGATGGATCGTGTGTTTGGGCAAAGTGTGACAAAAGAAGGTGGCACTACCAACATCAAAGGTAGCAGCAGATCAAGGTTGAGGGATGATGTTTTCACGGTTCCACAGATTAGTCCTGATTCCACTTCCAAGAGAACCAGATATCTATGGTAG 927 0.4531 MKIQCDVCSKDEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLHTPSSKQHPLCDICQERKAFMFCQQDRAILCKECDMSIHSVNEHTQKHDRFLLTGVKLSATPKLYSSASTASTPSKTKSGLTNSSDAKSKPSFSSCSKSNLSHQGLIAKTVPSVESVLPHTTTINKVGGSLVTMAGTGSTSSISEYLIETLPGWQVEDLLDSYVVPFGFSKGDHDILQQFDDAGIEGNLCSFSPNNNGIWVPQAPPPLYSSQMDRVFGQSVTKEGGTTNIKGSSRSRLRDDVFTVPQISPDSTSKRTRYLW* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3289 308 MobiDBLite consensus disorder prediction 114 140 - -
Lja5g3289 308 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Lja5g3289 308 CDD Bbox1_BBX-like 57 100 - -
Lja5g3289 308 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lja5g3289 308 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 305 - -
Lja5g3289 308 CDD Bbox1_BBX-like 5 47 - -
Lja5g3289 308 Gene3D Classic Zinc Finger 1 98 - -
Lja5g3289 308 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja5g3289 308 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 305 - -
Lja5g3289 308 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lja5g3289 308 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3289 Lja-Chr5 63409464 63411136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3289 1 308 C2C2-CO-like Transcription Factor Family AT1G75540 45.690 1.05e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja5g3289 zf-B_box 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3289 - - lja:Lj5g3v0165540.1 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3289 5 63409464 63411136 Lja5g3289 5 63409464 63411136 ECH