Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3270 ATGTTACAATATGTGGAACTCCCTGATTGTTTCTATCCTACACCACCAGTAACAATCCCCCCAAGTGCTCCAACGCCAAAACAATCTCTCTATCTCTCTAACCTTGACGACCAAAAGTTCCTCAGATTCTCCATCAAGTACTTGTTCCTCTTCAAGAAATCGGTGAGCTTCGACACGTTGAAGTCCTCTCTGGCTAGAGTTCTGGTGGATTACTACCCTTTGGCTGGTAGGTTGAGAACCAGCATTGAGGAAGATCACAACAAGCTTGAGGTGGATTGTAATGGAGAAGGTGCAGTTTTTGCTGAGGCTTTCATGGATGCAAGTGCTGAAGAGTTACTTGAATCTTCCAAGTTGCCAAACAAGTCATGGAGAAAGCTCTTGTACAGGGTGGAAGCTCAGAGTTTCTTAGATGTTCCTCCACTTGTAATCCAGGTGACAAGTCTCCGCTGCGGGGGAATGATCCTATGCACCGCAATCAACCACTGCCTATGCGATGGCATCGGCACGTCACAATTTCTCCACGCCTGGGCCCACCTAACCACAAATCCCACCACCAACTTAACCATCACACCCTTCCACTGGCGCCACGTGTTAAGATCTCAAAACCCGGCACAGGTAAAACTCCCTCACCCGAGTTACACCAGAACAAAGCTCACACCTCAAGTGGACCTCTTCACGTGGATGCAAACCCAATCACTAGTCGCCACGTCATTCACCTTCGGCCCCACCGAGGTCCTCCGGTTAAAGAAACATTCCCGCGTGCCGCGCAACACCACAACTTTCGAAGCAGTCGCAGCGCACACGTGGCGCTCGTGGGTCCGATCACTGAACCTGGGTCCCACAGTAACAGTCAAGCTTCTTTTCTCGGTCAACGTTAGAAAGAAGTTGAATCTCCCAGAAGGGTTTTATGGGAATGGTTTTGTGCTCGCATGTGCTGAGTCTTCGGTGTGGGACTTGGTGAGTTCTGATGATAATTTTCACCATGTTGTAAAACTAGTGCAACAAGCGAAGGGTGATTTGAGTGAAGAGTGTGTGAGGTCGATGATTGATTTGTTGGAGGATAAAAAGGTGAGGACTGATCTTTCAACTAGCTTGGTGATTTCTCAGTGGTCGAGGTTGGGGTTGGAGGATGTGGATTTTGGAGAAGGGAAGCCAGTGCATATGGGTCCTCTAACGAGTGATGTTTACTGCTTGTTTTTGCCGGTGGTTGGAGATGCTAAGGCGGTGAGGGTGCTCGTGTCGGTGCCGGAGAGTGTGGTGGAAAGGTTTCAAGGTTACATGATGATGAATGAGAGTTGGGAGAAAGATCATGGAGATGGTGATGTTAACAACACAAATAATATTAATGGGGTAGCATGCGTGATGAGGAAATGA 1374 0.4833 MLQYVELPDCFYPTPPVTIPPSAPTPKQSLYLSNLDDQKFLRFSIKYLFLFKKSVSFDTLKSSLARVLVDYYPLAGRLRTSIEEDHNKLEVDCNGEGAVFAEAFMDASAEELLESSKLPNKSWRKLLYRVEAQSFLDVPPLVIQVTSLRCGGMILCTAINHCLCDGIGTSQFLHAWAHLTTNPTTNLTITPFHWRHVLRSQNPAQVKLPHPSYTRTKLTPQVDLFTWMQTQSLVATSFTFGPTEVLRLKKHSRVPRNTTTFEAVAAHTWRSWVRSLNLGPTVTVKLLFSVNVRKKLNLPEGFYGNGFVLACAESSVWDLVSSDDNFHHVVKLVQQAKGDLSEECVRSMIDLLEDKKVRTDLSTSLVISQWSRLGLEDVDFGEGKPVHMGPLTSDVYCLFLPVVGDAKAVRVLVSVPESVVERFQGYMMMNESWEKDHGDGDVNNTNNINGVACVMRK* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3270 457 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 13 429 - -
Lja5g3270 457 Gene3D - 223 427 IPR023213 -
Lja5g3270 457 Pfam Transferase family 18 424 - -
Lja5g3270 457 PANTHER BNAC03G58010D PROTEIN 13 429 - -
Lja5g3270 457 Gene3D - 14 215 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3270 Lja-Chr5 63140463 63144765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3270 21 428 Monolignol Biosynthesis Gene Families AT5G48930 26.316 1.35e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3270 - - aip:107645267 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3270 5 63140463 63144765 Lja5g3270 5 63140463 63144765 ECH