Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3245 ATGGCTGATGCTCATGACACTGATAAGAACATTGAGGTATGGAAAATCAAGAAATTGATCAAGGCTCTTGAGGCTGCTAGAGGAAATGGGACCAGCATGATTTCCCTTATCATGCCTCCACGTGATCAAATTGCTCGTGTTACTAAGATGCTTGGTGATGAGTTTGGAACGGCTTCAAACATCAAAAGCAGGGTCAATCGACAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAAAGGCTTAAGCTTTATAACAAGGTTCCTCCTAATGGGCTTGTTTTGTATACTGGAACAATTGTCACTGAAGATGGGAAGGAAAAGAAGGTCACCTTTGATTTTGAGCCATTCAGACCAATCAACGCCTCTCTCTATCTTTGTGACAATAAGTTTCACACCGAAGCTTTGAACGAGCTCCTGGAATCTGATGACAAGTTTGGATTTATTATCATGGATGGCAATGGCACTCTGTTTGGGACCTTGAGTGGTAATACAAGAGAGGTGCTTCATAAGTTTAGCGTGGATCTCCCAAAGAAACATGGGCGAGGAGGGCAATCTGCTCTACGGTTTGCCCGTCTTCGTATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCAGAGCTTGCCACCCAGTTTTATATCAACCCTGCTACCAGCCAGCCCAATGTTTCAGGATTAATACTTGCTGGTTCAGCTGATTTCAAAACTGAGCTTAGCCAGTCAGACATGTTTGATCCTCGACTTCAGGCAAAAATACTCAATGTTGTGGATGTATCTTATGGAGGGGAGAATGGGTTTAATCAGGCTATTGAACTGTCTGCTGAAATTCTGGCCAATGTAAAGTTTATTCAGGAGAAAAAATTGATTGGAAAGTACTTTGAGGAAATCAGCCAAGATACTGGAAAGTATGTTTTTGGTGTTGATGATACCCTTAAAGCTCTGGAGATGGGAGCTGTTGAGACACTTATTGTGTGGGAAAATCTGGATATGAATAGTGTTACCGGTGAGATTGTCATTAAGCACTATAACAAGGAAGAGGATGCCAACCAGAGCAATTTTAGGGATCCTGTTAGCTCTGCTGATTATGAGGTTCAGGAAAAGTTGTCTCTGTTGGAGTGGTTTGCAAATGAATACAGACGATTTGGTTGCACTCTTGAGTTTGTCACCAATAAATCACAAGAAGGTTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGTGGTGTCTTGCGTTACCAGCTTGATATGAGAACATTTGATGATTTATCTGATGATGGGGGTGAAGGGAAGGTCATAATACCTGCACCAGTATGGGAGGTGGTTGCACGTGCTGCTGCTGCTCCTCCTCCACGTCTGTCTGTAGTGTTGCATGAAAGATGCTTTGCCCCAAAATTGCTTTCTGATATGAGTTGCTCTCTTGTTCTCATATCTTTCAATCTCTGGCACTACAAATTTCAGCAACATTGCTCGCAACAGCTGCTCCCCTGCGATCTGCTTGCACTCAGAAAGGCAAGAACAGAATTATGCTTCCCAAAGAAACACGAACTAGCGTCAATGAAGTCTTTGTTGGTTCTGTCTATCTATGTAACCCAGCAAAGCTTTGATGAAGAGTACGCTCACCAAGTTATGCTGCCTAAGGTGAATCCAGATATTTCAATAAACAGCTTTTCAAGGATGCTTTGA 1677 0.4299 MADAHDTDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIIMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDMNSVTGEIVIKHYNKEEDANQSNFRDPVSSADYEVQEKLSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGVLRYQLDMRTFDDLSDDGGEGKVIIPAPVWEVVARAAAAPPPRLSVVLHERCFAPKLLSDMSCSLVLISFNLWHYKFQQHCSQQLLPCDLLALRKARTELCFPKKHELASMKSLLVLSIYVTQQSFDEEYAHQVMLPKVNPDISINSFSRML* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3245 558 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 425 - -
Lja5g3245 558 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 13 411 IPR004403 GO:0003747|GO:0006415
Lja5g3245 558 Gene3D eRF1 domain 2 136 277 IPR042226 -
Lja5g3245 558 SUPERFAMILY Translational machinery components 142 276 - -
Lja5g3245 558 SMART eRF1_1_2 4 140 IPR005140 -
Lja5g3245 558 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 425 IPR004403 GO:0003747|GO:0006415
Lja5g3245 558 Pfam eRF1 domain 3 281 412 IPR005142 -
Lja5g3245 558 Pfam eRF1 domain 1 18 138 IPR005140 -
Lja5g3245 558 Gene3D eRF1 domain 1 2 135 IPR024049 -
Lja5g3245 558 Gene3D - 279 427 IPR029064 -
Lja5g3245 558 Pfam eRF1 domain 2 144 277 IPR005141 -
Lja5g3245 558 SUPERFAMILY L30e-like 278 414 IPR029064 -
Lja5g3245 558 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3245 Lja-Chr5 62777274 62780770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3245 1 422 Eukaryotic Initiation Factors Gene Family AT3G26618 88.785 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3245 K03265 - gmx:100785916 801.586